Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V1502_RS20375 Genome accession   NZ_CP143546
Coordinates   4183165..4183692 (-) Length   175 a.a.
NCBI ID   WP_409252413.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4178165..4188692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS20355 (V1502_20355) rplI 4179216..4179665 (-) 450 WP_006837316.1 50S ribosomal protein L9 -
  V1502_RS20360 (V1502_20360) - 4179662..4181635 (-) 1974 WP_409252411.1 DHH family phosphoesterase -
  V1502_RS20365 (V1502_20365) - 4181667..4182602 (-) 936 WP_409252412.1 YybS family protein -
  V1502_RS20370 (V1502_20370) rpsR 4182888..4183121 (-) 234 WP_044022817.1 30S ribosomal protein S18 -
  V1502_RS20375 (V1502_20375) ssbA 4183165..4183692 (-) 528 WP_409252413.1 single-stranded DNA-binding protein Machinery gene
  V1502_RS20380 (V1502_20380) rpsF 4183771..4184058 (-) 288 WP_409252414.1 30S ribosomal protein S6 -
  V1502_RS20385 (V1502_20385) ychF 4184966..4186066 (-) 1101 WP_409252415.1 redox-regulated ATPase YchF -
  V1502_RS20390 (V1502_20390) - 4186334..4186531 (-) 198 WP_409252416.1 DUF951 domain-containing protein -
  V1502_RS20395 (V1502_20395) - 4186545..4187495 (-) 951 WP_409252417.1 mechanosensitive ion channel family protein -
  V1502_RS20400 (V1502_20400) yyaC 4187687..4188307 (+) 621 WP_409252418.1 spore protease YyaC -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19504.30 Da        Isoelectric Point: 4.8013

>NTDB_id=929586 V1502_RS20375 WP_409252413.1 4183165..4183692(-) (ssbA) [Bacillus sp. SCS-153A]
MMNRVVLVGRLTKDPELKYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGKRVFMTEVVAESVQFLEPKSASQGGGSGYQGERGGNYGGGQRQQQDYSYSQNQNQRNNNNNQNYTRVDDDPFA
NDGQPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=929586 V1502_RS20375 WP_409252413.1 4183165..4183692(-) (ssbA) [Bacillus sp. SCS-153A]
ATGATGAACCGAGTTGTACTCGTGGGTCGTTTAACAAAGGATCCAGAATTGAAATACACTCCAAACGGGGTGCCCGTGGC
AACTTTCACACTTGCAGTGAATCGTTCTTTTACGAACCAGCAGGGTGAACGTGAAGCGGACTTTATTAATTGCGTTGTAT
GGCGTCGTCCAGCTGAAAACGTGGCTAACTTCTTGAAAAAAGGCAGCCTCGCCGGTGTTGACGGCCGCATTCAAACTCGT
AATTTCGAGGGACAGGATGGCAAACGCGTCTTCATGACAGAAGTCGTAGCAGAATCTGTTCAATTCCTTGAACCGAAGAG
TGCCAGCCAAGGCGGCGGCTCTGGTTATCAAGGTGAACGCGGCGGCAATTATGGCGGCGGACAAAGACAGCAGCAAGACT
ATTCATATAGTCAAAATCAGAATCAGCGCAATAATAACAACAACCAGAACTATACGCGTGTGGATGATGACCCATTCGCA
AATGACGGTCAGCCGATCGACATTTCCGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.886

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.682

100

0.56
  ssb Glaesserella parasuis strain SC1401

35.676

100

0.377
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.571

0.36