Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V1497_RS18590 Genome accession   NZ_CP143541
Coordinates   3607639..3608172 (-) Length   177 a.a.
NCBI ID   WP_349408994.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3602639..3613172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS18570 (V1497_18605) rplI 3603202..3603648 (-) 447 WP_349408991.1 50S ribosomal protein L9 -
  V1497_RS18575 (V1497_18610) - 3603645..3605618 (-) 1974 WP_349408992.1 DHH family phosphoesterase -
  V1497_RS18580 (V1497_18615) - 3605638..3606567 (-) 930 WP_349408993.1 YybS family protein -
  V1497_RS18585 (V1497_18620) rpsR 3607358..3607585 (-) 228 WP_221567495.1 30S ribosomal protein S18 -
  V1497_RS18590 (V1497_18625) ssbA 3607639..3608172 (-) 534 WP_349408994.1 single-stranded DNA-binding protein Machinery gene
  V1497_RS18595 (V1497_18630) rpsF 3608190..3608480 (-) 291 WP_349408995.1 30S ribosomal protein S6 -
  V1497_RS18600 (V1497_18635) ychF 3608820..3609917 (-) 1098 WP_349408996.1 redox-regulated ATPase YchF -
  V1497_RS18605 (V1497_18640) - 3610124..3610321 (-) 198 WP_349408997.1 DUF951 domain-containing protein -
  V1497_RS18610 (V1497_18645) - 3610407..3611402 (-) 996 WP_349408998.1 hypothetical protein -
  V1497_RS18615 (V1497_18650) yyaC 3611525..3612142 (+) 618 WP_349408999.1 spore protease YyaC -
  V1497_RS18620 (V1497_18655) - 3612176..3612913 (-) 738 WP_349409000.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19176.84 Da        Isoelectric Point: 4.7726

>NTDB_id=929389 V1497_RS18590 WP_349408994.1 3607639..3608172(-) (ssbA) [Pseudalkalibacillus sp. SCS-8]
MINRIILVGRLTKDPELRYTPNGVAVANFTLAVNRPFTNQQGDREADFINIVVWRRQAENAANFLKKGSLAGVDGRLQTR
SYENNEGRRVYVTEVMAESVQFLEPKGSNQGGGGGYNNQDNPFAGSGQGGQGGQGGYGNSGNKNFGGGNQNRNNDFNDDP
FANDGKPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=929389 V1497_RS18590 WP_349408994.1 3607639..3608172(-) (ssbA) [Pseudalkalibacillus sp. SCS-8]
GTGATCAACCGCATTATTCTTGTCGGCCGACTAACGAAAGATCCAGAGTTACGCTATACTCCGAACGGAGTTGCCGTAGC
GAATTTCACACTAGCAGTTAATCGTCCTTTTACGAACCAACAAGGTGATCGTGAAGCGGATTTCATTAACATCGTAGTGT
GGCGCAGACAAGCTGAAAACGCAGCGAATTTCTTGAAAAAAGGAAGCCTTGCTGGTGTTGACGGCCGTTTACAAACACGA
TCTTATGAAAATAATGAAGGTCGACGAGTATACGTAACCGAAGTCATGGCAGAAAGTGTCCAATTCCTTGAGCCGAAAGG
ATCCAACCAAGGCGGTGGCGGTGGTTATAACAACCAAGATAATCCATTCGCTGGTTCCGGACAAGGTGGCCAAGGCGGCC
AAGGCGGATACGGAAATTCAGGTAATAAGAATTTCGGCGGTGGCAATCAGAACCGTAATAACGACTTTAATGATGATCCT
TTCGCCAATGATGGTAAACCGATCGACATTTCTGATGACGACTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.429

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

55

100

0.559
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

59.887

0.373
  ssb Glaesserella parasuis strain SC1401

35.912

100

0.367