Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V0I11_RS06790 Genome accession   NZ_CP143490
Coordinates   1457964..1458464 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain FCf147     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1452964..1463464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0I11_RS06775 (V0I11_06775) rlmB 1453507..1454244 (+) 738 WP_330453313.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  V0I11_RS06780 (V0I11_06780) sodC 1454330..1454890 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  V0I11_RS06785 (V0I11_06785) uvrA 1454961..1457792 (-) 2832 WP_330453315.1 excinuclease ABC subunit UvrA -
  V0I11_RS06790 (V0I11_06790) ssb 1457964..1458464 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  V0I11_RS06795 (V0I11_06795) folD 1458971..1459825 (-) 855 WP_064968741.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  V0I11_RS06810 (V0I11_06810) - 1460468..1460887 (+) 420 WP_330453317.1 DUF417 family protein -
  V0I11_RS06815 (V0I11_06815) lipA 1460964..1461926 (-) 963 WP_005725033.1 lipoyl synthase -
  V0I11_RS06820 (V0I11_06820) lipB 1461991..1462647 (-) 657 WP_078836111.1 lipoyl(octanoyl) transferase LipB -
  V0I11_RS06825 (V0I11_06825) ybeD 1462654..1462950 (-) 297 WP_005719420.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=929180 V0I11_RS06790 WP_005725039.1 1457964..1458464(+) (ssb) [Pasteurella multocida strain FCf147]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=929180 V0I11_RS06790 WP_005725039.1 1457964..1458464(+) (ssb) [Pasteurella multocida strain FCf147]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACAGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47