Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V0I11_RS02730 | Genome accession | NZ_CP143490 |
| Coordinates | 589797..590249 (-) | Length | 150 a.a. |
| NCBI ID | WP_330453955.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain FCf147 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 584262..635626 | 589797..590249 | within | 0 |
Gene organization within MGE regions
Location: 584262..635626
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V0I11_RS02670 (V0I11_02670) | - | 584262..584471 (+) | 210 | WP_330453937.1 | cold-shock protein | - |
| V0I11_RS02675 (V0I11_02675) | - | 585014..585211 (-) | 198 | WP_014391107.1 | helix-turn-helix transcriptional regulator | - |
| V0I11_RS02680 (V0I11_02680) | - | 585247..585564 (-) | 318 | WP_330453940.1 | hypothetical protein | - |
| V0I11_RS02685 (V0I11_02685) | - | 585568..586068 (-) | 501 | WP_330453942.1 | pyruvate kinase | - |
| V0I11_RS02690 (V0I11_02690) | - | 586072..586503 (-) | 432 | WP_330453944.1 | hypothetical protein | - |
| V0I11_RS02695 (V0I11_02695) | - | 586506..586772 (-) | 267 | WP_330453945.1 | hypothetical protein | - |
| V0I11_RS02700 (V0I11_02700) | - | 586815..587168 (-) | 354 | WP_014390697.1 | hypothetical protein | - |
| V0I11_RS02705 (V0I11_02705) | - | 587177..587458 (-) | 282 | WP_330453948.1 | DUF6378 domain-containing protein | - |
| V0I11_RS02710 (V0I11_02710) | - | 587455..587613 (-) | 159 | WP_330453949.1 | hypothetical protein | - |
| V0I11_RS02715 (V0I11_02715) | - | 587610..588132 (-) | 523 | Protein_512 | MazG-like family protein | - |
| V0I11_RS02720 (V0I11_02720) | - | 588432..589337 (-) | 906 | WP_330453951.1 | prohibitin family protein | - |
| V0I11_RS02725 (V0I11_02725) | - | 589578..589787 (-) | 210 | WP_330453952.1 | hypothetical protein | - |
| V0I11_RS02730 (V0I11_02730) | ssb | 589797..590249 (-) | 453 | WP_330453955.1 | single-stranded DNA-binding protein | Machinery gene |
| V0I11_RS02735 (V0I11_02735) | - | 590249..590908 (-) | 660 | WP_330453957.1 | translocation protein TolB precursor | - |
| V0I11_RS02740 (V0I11_02740) | - | 590895..591848 (-) | 954 | WP_330453958.1 | recombinase RecT | - |
| V0I11_RS02745 (V0I11_02745) | - | 591850..592131 (-) | 282 | WP_330453960.1 | hypothetical protein | - |
| V0I11_RS02750 (V0I11_02750) | - | 592373..592663 (-) | 291 | WP_330453962.1 | hypothetical protein | - |
| V0I11_RS02755 (V0I11_02755) | - | 592749..593375 (-) | 627 | WP_330453965.1 | Bro-N domain-containing protein | - |
| V0I11_RS02760 (V0I11_02760) | - | 593654..594157 (-) | 504 | WP_330453967.1 | DUF4760 domain-containing protein | - |
| V0I11_RS02765 (V0I11_02765) | - | 594902..595438 (+) | 537 | WP_061406092.1 | hypothetical protein | - |
| V0I11_RS02770 (V0I11_02770) | - | 595773..596318 (-) | 546 | WP_250251973.1 | hypothetical protein | - |
| V0I11_RS02775 (V0I11_02775) | - | 596355..597317 (-) | 963 | WP_250251974.1 | hypothetical protein | - |
| V0I11_RS02780 (V0I11_02780) | - | 597390..598079 (-) | 690 | WP_108574992.1 | XRE family transcriptional regulator | - |
| V0I11_RS02785 (V0I11_02785) | - | 598207..598416 (+) | 210 | WP_005720263.1 | helix-turn-helix transcriptional regulator | - |
| V0I11_RS02790 (V0I11_02790) | - | 598437..598712 (+) | 276 | WP_005756640.1 | hypothetical protein | - |
| V0I11_RS02795 (V0I11_02795) | - | 598770..599471 (+) | 702 | WP_330453971.1 | phage antirepressor KilAC domain-containing protein | - |
| V0I11_RS02800 (V0I11_02800) | - | 599468..600238 (+) | 771 | WP_330453972.1 | helix-turn-helix domain-containing protein | - |
| V0I11_RS02805 (V0I11_02805) | - | 600238..600933 (+) | 696 | WP_330454234.1 | replication protein P | - |
| V0I11_RS02810 (V0I11_02810) | - | 600926..601456 (+) | 531 | WP_272465511.1 | MT-A70 family methyltransferase | - |
| V0I11_RS02815 (V0I11_02815) | - | 601465..601902 (+) | 438 | WP_064965060.1 | DUF1367 family protein | - |
| V0I11_RS02820 (V0I11_02820) | - | 602062..602283 (+) | 222 | WP_330453973.1 | hypothetical protein | - |
| V0I11_RS02825 (V0I11_02825) | - | 602270..602512 (+) | 243 | WP_330453974.1 | hypothetical protein | - |
| V0I11_RS02830 (V0I11_02830) | - | 602509..602664 (+) | 156 | WP_155736201.1 | hypothetical protein | - |
| V0I11_RS02835 (V0I11_02835) | - | 602876..603457 (+) | 582 | Protein_536 | recombination protein NinG | - |
| V0I11_RS02840 (V0I11_02840) | - | 603454..603957 (+) | 504 | WP_330453977.1 | antiterminator Q family protein | - |
| V0I11_RS02850 (V0I11_02850) | - | 604210..604575 (+) | 366 | WP_032854011.1 | phage holin, lambda family | - |
| V0I11_RS02855 (V0I11_02855) | - | 604547..605131 (+) | 585 | WP_250251989.1 | glycoside hydrolase family 19 protein | - |
| V0I11_RS02860 (V0I11_02860) | - | 605134..605457 (+) | 324 | WP_330453979.1 | DUF2570 family protein | - |
| V0I11_RS02865 (V0I11_02865) | - | 605432..605644 (+) | 213 | WP_330454236.1 | lytic protein Rz1 | - |
| V0I11_RS02870 (V0I11_02870) | - | 605675..606109 (-) | 435 | WP_046338366.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| V0I11_RS02875 (V0I11_02875) | - | 606138..606320 (-) | 183 | WP_330453982.1 | type II toxin-antitoxin system HicA family toxin | - |
| V0I11_RS02880 (V0I11_02880) | - | 606636..607115 (+) | 480 | WP_115322756.1 | DUF1441 family protein | - |
| V0I11_RS02885 (V0I11_02885) | - | 607115..609226 (+) | 2112 | WP_330453985.1 | phage terminase large subunit family protein | - |
| V0I11_RS02890 (V0I11_02890) | - | 609223..609447 (+) | 225 | WP_330453987.1 | hypothetical protein | - |
| V0I11_RS02895 (V0I11_02895) | - | 609530..609709 (+) | 180 | WP_330453988.1 | hypothetical protein | - |
| V0I11_RS02900 (V0I11_02900) | - | 609721..611232 (+) | 1512 | WP_330453989.1 | phage portal protein | - |
| V0I11_RS02905 (V0I11_02905) | - | 611282..611803 (+) | 522 | WP_330453990.1 | phage antirepressor N-terminal domain-containing protein | - |
| V0I11_RS02910 (V0I11_02910) | - | 611835..612266 (-) | 432 | WP_330453991.1 | hypothetical protein | - |
| V0I11_RS02915 (V0I11_02915) | - | 612534..613178 (+) | 645 | WP_330453992.1 | KilA-N domain-containing protein | - |
| V0I11_RS02920 (V0I11_02920) | - | 613266..615242 (+) | 1977 | WP_330453993.1 | ClpP-like prohead protease/major capsid protein fusion protein | - |
| V0I11_RS02925 (V0I11_02925) | - | 615309..615635 (+) | 327 | WP_330453995.1 | DUF2190 family protein | - |
| V0I11_RS02930 (V0I11_02930) | - | 615628..615930 (+) | 303 | WP_330453996.1 | phage tail protein | - |
| V0I11_RS02935 (V0I11_02935) | - | 615934..616461 (+) | 528 | WP_330453997.1 | phage tail protein | - |
| V0I11_RS02940 (V0I11_02940) | gpU | 616461..616874 (+) | 414 | WP_330453998.1 | phage tail terminator protein | - |
| V0I11_RS02945 (V0I11_02945) | - | 616871..617521 (+) | 651 | WP_330454001.1 | hypothetical protein | - |
| V0I11_RS02950 (V0I11_02950) | - | 617576..617968 (+) | 393 | WP_250252012.1 | hypothetical protein | - |
| V0I11_RS02955 (V0I11_02955) | - | 618037..618264 (+) | 228 | WP_083005723.1 | DUF4035 domain-containing protein | - |
| V0I11_RS02960 (V0I11_02960) | - | 618528..619046 (+) | 519 | WP_330454004.1 | phage antirepressor N-terminal domain-containing protein | - |
| V0I11_RS02965 (V0I11_02965) | - | 619193..619318 (+) | 126 | WP_265176396.1 | hypothetical protein | - |
| V0I11_RS02970 (V0I11_02970) | - | 619324..619512 (+) | 189 | WP_330454007.1 | hypothetical protein | - |
| V0I11_RS02975 (V0I11_02975) | - | 619515..620036 (+) | 522 | WP_330454008.1 | hypothetical protein | - |
| V0I11_RS02980 (V0I11_02980) | - | 620199..621344 (+) | 1146 | WP_330454237.1 | type I restriction endonuclease | - |
| V0I11_RS02985 (V0I11_02985) | - | 621476..621634 (+) | 159 | WP_159074444.1 | hypothetical protein | - |
| V0I11_RS02990 (V0I11_02990) | - | 621950..622777 (+) | 828 | WP_330454011.1 | phage antirepressor N-terminal domain-containing protein | - |
| V0I11_RS02995 (V0I11_02995) | - | 622832..623188 (+) | 357 | WP_250252024.1 | DUF2513 domain-containing protein | - |
| V0I11_RS03000 (V0I11_03000) | - | 623247..623498 (+) | 252 | WP_330454016.1 | hypothetical protein | - |
| V0I11_RS03005 (V0I11_03005) | - | 623615..626926 (+) | 3312 | WP_330454017.1 | tape measure protein | - |
| V0I11_RS03010 (V0I11_03010) | - | 626923..627351 (+) | 429 | WP_330454018.1 | phage tail protein | - |
| V0I11_RS03015 (V0I11_03015) | - | 627344..628147 (+) | 804 | WP_330454019.1 | hypothetical protein | - |
| V0I11_RS03020 (V0I11_03020) | - | 628159..628743 (+) | 585 | WP_330454021.1 | DUF4376 domain-containing protein | - |
| V0I11_RS03025 (V0I11_03025) | - | 628730..628996 (+) | 267 | WP_330454022.1 | DNA helicase UvrD | - |
| V0I11_RS03030 (V0I11_03030) | - | 629005..629718 (+) | 714 | WP_250252030.1 | phage minor tail protein L | - |
| V0I11_RS03035 (V0I11_03035) | - | 629721..630455 (+) | 735 | WP_330454025.1 | C40 family peptidase | - |
| V0I11_RS03040 (V0I11_03040) | - | 630398..631021 (+) | 624 | WP_250252033.1 | tail assembly protein | - |
| V0I11_RS03045 (V0I11_03045) | - | 631025..634366 (+) | 3342 | WP_330454027.1 | host specificity protein J | - |
| V0I11_RS03050 (V0I11_03050) | - | 634385..635626 (-) | 1242 | WP_330454029.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16944.82 Da Isoelectric Point: 6.9832
>NTDB_id=929172 V0I11_RS02730 WP_330453955.1 589797..590249(-) (ssb) [Pasteurella multocida strain FCf147]
MAGVNKAIIVGNLGNDPEIRTMPNGDAVAKISVATSESWIDKNTNERKEVTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQPQQAQAPQNNAYANAKSGKPVQQQVGNFEEDNIPF
MAGVNKAIIVGNLGNDPEIRTMPNGDAVAKISVATSESWIDKNTNERKEVTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQPQQAQAPQNNAYANAKSGKPVQQQVGNFEEDNIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=929172 V0I11_RS02730 WP_330453955.1 589797..590249(-) (ssb) [Pasteurella multocida strain FCf147]
ATGGCTGGAGTAAATAAAGCAATTATTGTCGGAAATTTAGGTAATGATCCTGAAATCCGCACAATGCCAAATGGCGACGC
AGTGGCAAAAATTAGTGTGGCCACGAGCGAAAGTTGGATTGACAAAAACACTAACGAACGAAAAGAAGTGACCGAGTGGC
ACTCTATTGTGTTTTATCGCCGCCAAGCAGAAATTTGCGGGCAGTATCTCAAGAAAGGCTCAAAAGTGTATGTAGAAGGT
CGTTTAAAAACTCGCAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACCGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCGCAACCACAGCAAGCACAGGCACCACAAAACAATGCTTATGCGAATGCGAAAAGTGGAA
AGCCTGTACAACAACAGGTAGGTAACTTTGAAGAGGATAATATCCCGTTTTAG
ATGGCTGGAGTAAATAAAGCAATTATTGTCGGAAATTTAGGTAATGATCCTGAAATCCGCACAATGCCAAATGGCGACGC
AGTGGCAAAAATTAGTGTGGCCACGAGCGAAAGTTGGATTGACAAAAACACTAACGAACGAAAAGAAGTGACCGAGTGGC
ACTCTATTGTGTTTTATCGCCGCCAAGCAGAAATTTGCGGGCAGTATCTCAAGAAAGGCTCAAAAGTGTATGTAGAAGGT
CGTTTAAAAACTCGCAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACCGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCGCAACCACAGCAAGCACAGGCACCACAAAACAATGCTTATGCGAATGCGAAAAGTGGAA
AGCCTGTACAACAACAGGTAGGTAACTTTGAAGAGGATAATATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
86.486 |
74 |
0.64 |
| ssb | Vibrio cholerae strain A1552 |
53.957 |
92.667 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
46.715 |
91.333 |
0.427 |
| ssb | Neisseria meningitidis MC58 |
46.715 |
91.333 |
0.427 |