Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ROLI_RS11495 Genome accession   NZ_CP143423
Coordinates   2353558..2354058 (+) Length   166 a.a.
NCBI ID   WP_187430066.1    Uniprot ID   -
Organism   Roseobacter fucihabitans strain B14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2348558..2359058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROLI_RS11480 (ROLI_023480) - 2349252..2350469 (+) 1218 WP_187430063.1 ABC transporter permease -
  ROLI_RS11485 (ROLI_023490) - 2350559..2352649 (+) 2091 WP_187430064.1 ABC transporter ATP-binding protein -
  ROLI_RS11490 (ROLI_023500) - 2352777..2353337 (-) 561 WP_262386505.1 lytic transglycosylase domain-containing protein -
  ROLI_RS11495 (ROLI_023510) ssb 2353558..2354058 (+) 501 WP_187430066.1 single-stranded DNA-binding protein Machinery gene
  ROLI_RS11500 (ROLI_023520) - 2354042..2354488 (+) 447 WP_187430067.1 GNAT family N-acetyltransferase -
  ROLI_RS11505 (ROLI_023530) aroB 2354485..2355600 (-) 1116 WP_187430068.1 3-dehydroquinate synthase -
  ROLI_RS11510 (ROLI_023540) - 2355593..2356186 (-) 594 WP_187430069.1 shikimate kinase -
  ROLI_RS11515 (ROLI_023550) - 2356269..2356418 (+) 150 WP_187430070.1 hypothetical protein -
  ROLI_RS11520 (ROLI_023560) - 2356408..2357961 (+) 1554 WP_187430071.1 hypothetical protein -
  ROLI_RS11525 (ROLI_023570) - 2357961..2358929 (+) 969 WP_187430072.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17754.35 Da        Isoelectric Point: 5.3024

>NTDB_id=929025 ROLI_RS11495 WP_187430066.1 2353558..2354058(+) (ssb) [Roseobacter fucihabitans strain B14]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNSGERKERTEWHSVAIFQEGLVRIAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGYGGTLTMLDGRDGGGSGGNYGGNDGGGSMGYDDRGGGGGGSSSGGGNQAPSRDL
DDEIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=929025 ROLI_RS11495 WP_187430066.1 2353558..2354058(+) (ssb) [Roseobacter fucihabitans strain B14]
ATGGCAGGCTCAGTCAACAAAGTAATTCTCATCGGCAATCTGGGGCGTGACCCGGAGGTCCGCAGCTTTCAGAACGGTGG
CAAAGTGTGCAACCTACGCATTGCGACCTCTGAGACCTGGAAAGACCGCAATAGCGGCGAGCGCAAAGAGCGCACGGAAT
GGCATTCGGTGGCGATCTTCCAGGAAGGGCTCGTGCGCATCGCCGAGCAATACCTGCGCAAAGGCTCCAAGGTCTATATC
GAAGGCCAGCTTCAGACCCGCAAGTGGCAGGACCAATCCGGTCAGGACCGCTATTCCACCGAAGTCGTGCTGCAAGGCTA
CGGCGGCACGCTGACCATGCTGGATGGTCGCGACGGCGGCGGTAGCGGTGGCAATTATGGTGGTAACGACGGCGGTGGCT
CGATGGGGTATGACGACCGCGGCGGTGGCGGCGGGGGCAGCAGTTCGGGTGGCGGCAACCAGGCCCCTTCGCGCGATCTG
GACGATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.757

100

0.56
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.524
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.452
  ssb Neisseria meningitidis MC58

41.341

100

0.446