Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1228_RS16515 Genome accession   NZ_CP143353
Coordinates   3585354..3585878 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain 2023CK-01567     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3580354..3590878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1228_RS16510 (V1228_16510) uvrA 3582267..3585101 (-) 2835 WP_196551192.1 excinuclease ABC subunit UvrA -
  V1228_RS16515 (V1228_16515) ssb 3585354..3585878 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1228_RS16520 (V1228_16520) zur 3586220..3586750 (+) 531 WP_004245904.1 zinc uptake transcriptional repressor Zur -
  V1228_RS16525 (V1228_16525) lexA 3586951..3587562 (-) 612 WP_004245906.1 transcriptional repressor LexA -
  V1228_RS16530 (V1228_16530) - 3587690..3588061 (-) 372 WP_004245908.1 diacylglycerol kinase -
  V1228_RS16535 (V1228_16535) plsB 3588192..3590675 (+) 2484 WP_004249159.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=928857 V1228_RS16515 WP_004249162.1 3585354..3585878(+) (ssb) [Proteus mirabilis strain 2023CK-01567]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=928857 V1228_RS16515 WP_004249162.1 3585354..3585878(+) (ssb) [Proteus mirabilis strain 2023CK-01567]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCAGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489