Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SA496_RS08315 Genome accession   NZ_CP143312
Coordinates   1782893..1783528 (+) Length   211 a.a.
NCBI ID   WP_120651631.1    Uniprot ID   -
Organism   Pseudomonas sp. JS3066     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1777893..1788528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA496_RS08295 (SA496_08295) lolD 1777914..1778597 (+) 684 WP_120651635.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  SA496_RS08300 (SA496_08300) - 1778599..1779843 (+) 1245 WP_120651634.1 lipoprotein-releasing ABC transporter permease subunit -
  SA496_RS08305 (SA496_08305) - 1779894..1780421 (-) 528 WP_120651633.1 DUF2062 domain-containing protein -
  SA496_RS08310 (SA496_08310) comA 1780595..1782820 (+) 2226 WP_330115625.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SA496_RS08315 (SA496_08315) exbB 1782893..1783528 (+) 636 WP_120651631.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SA496_RS08320 (SA496_08320) - 1783525..1783971 (+) 447 WP_120651630.1 biopolymer transporter ExbD -
  SA496_RS08325 (SA496_08325) lpxK 1783971..1784975 (+) 1005 WP_153921114.1 tetraacyldisaccharide 4'-kinase -
  SA496_RS08330 (SA496_08330) - 1785016..1785201 (+) 186 WP_077525327.1 Trm112 family protein -
  SA496_RS08335 (SA496_08335) kdsB 1785198..1785962 (+) 765 WP_153921117.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SA496_RS08340 (SA496_08340) - 1785962..1786426 (+) 465 WP_153921119.1 low molecular weight protein-tyrosine-phosphatase -
  SA496_RS08345 (SA496_08345) murB 1786423..1787442 (+) 1020 WP_120651626.1 UDP-N-acetylmuramate dehydrogenase -
  SA496_RS08350 (SA496_08350) - 1787521..1787802 (-) 282 WP_120651625.1 pyrimidine/purine nucleoside phosphorylase -
  SA496_RS08355 (SA496_08355) - 1787881..1788423 (-) 543 WP_120651624.1 exonuclease domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22967.15 Da        Isoelectric Point: 6.8677

>NTDB_id=928641 SA496_RS08315 WP_120651631.1 1782893..1783528(+) (exbB) [Pseudomonas sp. JS3066]
MWELVKAGGWMMLPIILCSIAATAIVAERLWTLRISRVSPPHLLGQVWRQIKDKQLNSQKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIDIFGGFMENGMANAPVLAGGIAKALVTTAA
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEVVQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=928641 SA496_RS08315 WP_120651631.1 1782893..1783528(+) (exbB) [Pseudomonas sp. JS3066]
GTGTGGGAGTTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGTGTTCCATCGCCGCCACCGCGATCGTTGC
CGAACGCCTGTGGACCCTGCGCATCAGCCGCGTGTCTCCGCCGCACCTGCTGGGCCAGGTCTGGCGCCAGATCAAGGACA
AGCAGCTGAACAGCCAGAAGCTCAAGGAGCTGCGCGCCTCTTCGCCGCTGGGTGAGGTGCTGGCTGCGGGCCTGGCCAAC
TCCAAACATGGCCGCGAAATCATGAAGGAGTGCATCGAGGAAGCTGCCAGTCGGGTCATCCATGAGCTGGAGCGCTACCT
CAATGCCCTTGGCACCATCGCTGCCATGGCGCCGCTACTCGGCCTGCTGGGTACCGTCTTCGGCATGATCGATATATTCG
GCGGCTTCATGGAGAACGGCATGGCCAACGCGCCCGTGCTGGCCGGCGGTATCGCCAAGGCGCTGGTGACCACTGCTGCA
GGCCTGATCGTCGCCATTCCGGCTGTGTTCTTCCACCGTTACCTGCTGCGTCGTGTTGACGAGCTGGTAGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAGTGGTCCAAGGCGATCGCGAAGTGGATTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.609

98.104

0.81