Detailed information NTG0928640

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: SA496_RS08310
• Genome accession: NZ_CP143312
• Coordinates: 1780595..1782820 (+)
• Length: 741 a.a.
• NCBI ID: WP_330115625.1
• Uniprot ID: -
• Organism: Pseudomonas sp. JS3066
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1775595..1787820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA496_RS08280 (SA496_08280)	-	1775620..1775910 (-)	291	WP_330115261.1	phosphodiesterase	-
SA496_RS08285 (SA496_08285)	-	1775920..1776504 (-)	585	WP_120651637.1	PilZ domain-containing protein	-
SA496_RS08290 (SA496_08290)	-	1776671..1777921 (+)	1251	WP_120651636.1	lipoprotein-releasing ABC transporter permease subunit	-
SA496_RS08295 (SA496_08295)	lolD	1777914..1778597 (+)	684	WP_120651635.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
SA496_RS08300 (SA496_08300)	-	1778599..1779843 (+)	1245	WP_120651634.1	lipoprotein-releasing ABC transporter permease subunit	-
SA496_RS08305 (SA496_08305)	-	1779894..1780421 (-)	528	WP_120651633.1	DUF2062 domain-containing protein	-
SA496_RS08310 (SA496_08310)	comA	1780595..1782820 (+)	2226	WP_330115625.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
SA496_RS08315 (SA496_08315)	exbB	1782893..1783528 (+)	636	WP_120651631.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
SA496_RS08320 (SA496_08320)	-	1783525..1783971 (+)	447	WP_120651630.1	biopolymer transporter ExbD	-
SA496_RS08325 (SA496_08325)	lpxK	1783971..1784975 (+)	1005	WP_153921114.1	tetraacyldisaccharide 4'-kinase	-
SA496_RS08330 (SA496_08330)	-	1785016..1785201 (+)	186	WP_077525327.1	Trm112 family protein	-
SA496_RS08335 (SA496_08335)	kdsB	1785198..1785962 (+)	765	WP_153921117.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
SA496_RS08340 (SA496_08340)	-	1785962..1786426 (+)	465	WP_153921119.1	low molecular weight protein-tyrosine-phosphatase	-
SA496_RS08345 (SA496_08345)	murB	1786423..1787442 (+)	1020	WP_120651626.1	UDP-N-acetylmuramate dehydrogenase	-
SA496_RS08350 (SA496_08350)	-	1787521..1787802 (-)	282	WP_120651625.1	pyrimidine/purine nucleoside phosphorylase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 79975.99 Da
• Isoelectric Point: 10.1736

>NTDB_id=928640 SA496_RS08310 WP_330115625.1 1780595..1782820(+) (comA) [Pseudomonas sp. JS3066]
MVSGLATLAVGLLLLRWMPVLPPVWWLLLQLILGFALLASRAWRSGLFLLGLGWACMSAQWALDDRLESRLDGQVRWLEG
TVVGLPSTADGVVRFELAALHSSRAQLPGRLRLSWHGGPRVFAGERWRLAVRLKRPRGLVNPATFDYEAWLLARRIGATG
SVKAGERLEAASGPVAWRDSLRHRLLQVDAWGRAGGLAALVLGDGSGLQDRDWRLLQDTGTTHLMVISGQHITLFAGVLY
GLVVVLARNGLWPRSLPWLPWACAMALAGGLGYGVLAGFDVPVQRACVMLGVVLLWRLRFRHLGFLTPLLVALCAVLLAE
PLVVLQPGFWLSFGAVVLLVLAFAGRLGAWRWWATWWRAQWVMGVGLAPLLLALALPISLSGPLANLLAVPWISLVVLPL
ALLGTLLLGIPLLGDALLWLAGGALELLFQILAWTATQVPAWIPTQVPFWGWILGTLGVLLLIAPAGVPLRALGLALLLP
MLFPPQERPARGQAEVRVLDVGQGLSVLVRTHEHAMLYDAGPRRGDFDIGERVVVPTLRGLGLSRLDLLLLSHADSDHSG
GALAVSRGLAVARVLTGELERLPSELGAEACPADLAWTWDGVRFRIWQSPLTGDSNDGSCVLSVEAAGERILLSGDLGAR
GEAAWVASGQPLAARWLVAGHHGSRTSSSGAFLHAVAPEKVLISRGHLNPYGHPHPLIVSRIGALPAEIHDTAKQGHLLL
RLGAGVEPESEREKSVFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=928640 SA496_RS08310 WP_330115625.1 1780595..1782820(+) (comA) [Pseudomonas sp. JS3066]
ATGGTTTCGGGGTTGGCCACGCTTGCCGTAGGCCTTCTTTTATTGCGCTGGATGCCTGTCTTGCCGCCTGTCTGGTGGCT
CCTGCTCCAGTTGATTCTCGGATTCGCGCTGCTGGCGTCGCGTGCCTGGCGCAGCGGGCTGTTCCTGCTTGGTCTCGGTT
GGGCTTGCATGAGTGCCCAATGGGCGTTGGACGACCGGTTGGAATCGCGGTTGGACGGCCAGGTGCGCTGGTTGGAAGGA
ACCGTGGTCGGCCTCCCCAGCACGGCTGATGGGGTGGTGCGCTTCGAGCTGGCGGCGCTCCATTCCTCCCGGGCGCAATT
GCCTGGCAGGTTGCGGCTGTCCTGGCATGGCGGCCCGCGTGTGTTTGCCGGCGAACGCTGGCGGCTGGCTGTTCGCCTTA
AACGACCGCGTGGTCTCGTGAATCCCGCGACCTTTGACTACGAGGCGTGGCTGCTGGCACGGCGCATAGGGGCAACCGGC
TCGGTCAAGGCCGGGGAGCGACTGGAAGCGGCAAGCGGCCCTGTCGCCTGGCGGGACTCCTTGCGTCATCGTTTGCTGCA
GGTGGATGCCTGGGGACGGGCCGGTGGGCTAGCCGCCTTGGTGCTGGGCGACGGCTCCGGCTTGCAGGATCGGGACTGGC
GCCTGTTACAAGACACGGGGACCACGCACCTGATGGTGATTTCCGGTCAGCACATCACGCTATTCGCGGGTGTCCTTTAC
GGCCTGGTGGTGGTGCTCGCTCGAAACGGACTCTGGCCTCGGTCGCTGCCCTGGCTACCCTGGGCTTGTGCCATGGCTCT
CGCCGGTGGGCTCGGATATGGCGTGCTGGCAGGATTCGATGTGCCGGTGCAGCGAGCTTGCGTGATGCTTGGCGTCGTCT
TGCTCTGGCGTTTGCGCTTTCGCCACCTGGGATTCCTCACGCCTTTGCTGGTGGCGCTGTGTGCCGTATTGCTGGCTGAA
CCATTGGTAGTGCTGCAACCGGGATTCTGGCTTTCCTTTGGTGCTGTGGTCCTGCTGGTGCTGGCCTTTGCCGGGCGGCT
GGGGGCATGGCGCTGGTGGGCGACCTGGTGGCGAGCTCAGTGGGTCATGGGTGTGGGGTTGGCGCCTCTGCTGCTGGCCC
TGGCCTTGCCCATCAGCCTCAGTGGCCCTCTGGCGAACCTGCTGGCGGTGCCCTGGATCAGCCTGGTGGTGCTGCCGCTG
GCGCTGCTAGGCACATTGCTACTTGGCATTCCCCTACTGGGGGATGCATTGCTCTGGTTGGCCGGTGGTGCCCTGGAGTT
GCTGTTCCAGATACTGGCCTGGACGGCGACGCAGGTTCCCGCCTGGATTCCTACGCAAGTTCCGTTCTGGGGTTGGATCC
TTGGAACGCTGGGTGTACTGCTGCTGATTGCCCCGGCTGGCGTGCCGCTGCGTGCGCTGGGGCTGGCGCTGCTATTGCCC
ATGCTGTTCCCGCCGCAGGAGCGCCCGGCACGTGGTCAGGCCGAGGTTCGGGTGCTGGATGTGGGGCAGGGCCTTTCGGT
GCTGGTCCGCACTCACGAGCATGCGATGCTCTACGACGCCGGTCCGCGCCGGGGCGACTTCGATATCGGCGAGCGTGTGG
TAGTTCCGACCCTGCGCGGCCTGGGGTTGTCTCGGCTGGATCTGTTACTGCTCAGTCATGCGGATTCCGATCATTCCGGC
GGCGCCCTGGCCGTAAGTCGGGGGTTGGCGGTGGCGCGGGTGCTGACTGGTGAGCTGGAGCGGCTGCCATCCGAACTGGG
CGCCGAGGCCTGTCCGGCTGATCTGGCCTGGACTTGGGATGGCGTGAGATTCCGAATCTGGCAGTCGCCACTGACAGGCG
ATAGCAATGATGGCTCATGTGTGTTGTCGGTCGAGGCCGCTGGTGAGCGCATCCTGTTGAGTGGCGATCTCGGGGCTCGC
GGTGAAGCCGCCTGGGTCGCCAGTGGCCAGCCACTTGCGGCGCGCTGGCTGGTGGCGGGCCACCATGGCAGCCGAACGTC
CTCCAGTGGCGCGTTCCTGCATGCCGTGGCGCCTGAGAAAGTGCTGATTTCCCGAGGCCACCTGAACCCCTACGGCCATC
CCCATCCGTTGATCGTTTCGCGAATCGGCGCGCTGCCCGCCGAGATCCATGACACGGCGAAGCAGGGTCATTTGCTGCTG
CGTCTGGGCGCTGGCGTCGAGCCGGAGAGCGAGCGAGAAAAGTCCGTATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-687)

• Competence protein (Competence) (200-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.165	97.301	0.595
comA	Ralstonia pseudosolanacearum GMI1000	36.449	100	0.368