Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SA496_RS00725 Genome accession   NZ_CP143312
Coordinates   146992..147477 (+) Length   161 a.a.
NCBI ID   WP_044872677.1    Uniprot ID   A0AAD0TDV7
Organism   Pseudomonas sp. JS3066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 141992..152477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA496_RS00715 (SA496_00715) uvrA 142545..145379 (-) 2835 WP_120653274.1 excinuclease ABC subunit UvrA -
  SA496_RS00720 (SA496_00720) - 145588..146982 (+) 1395 WP_120653273.1 MFS transporter -
  SA496_RS00725 (SA496_00725) ssb 146992..147477 (+) 486 WP_044872677.1 single-stranded DNA-binding protein Machinery gene
  SA496_RS00730 (SA496_00730) - 147629..148378 (+) 750 WP_120653272.1 FadR/GntR family transcriptional regulator -
  SA496_RS00735 (SA496_00735) kdgD 148784..149695 (+) 912 WP_330114864.1 5-dehydro-4-deoxyglucarate dehydratase -
  SA496_RS00740 (SA496_00740) - 149717..151159 (+) 1443 WP_330114865.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17919.86 Da        Isoelectric Point: 5.3193

>NTDB_id=928631 SA496_RS00725 WP_044872677.1 146992..147477(+) (ssb) [Pseudomonas sp. JS3066]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTREWEKDGVKRYTTEIVVDINGQMQLLGGRPGSEGDAPRAPRPQREPQQSAPQQRPAPQPAAQPAPDYDSFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=928631 SA496_RS00725 WP_044872677.1 146992..147477(+) (ssb) [Pseudomonas sp. JS3066]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGATCCGGAGACCCGCTACCTGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGTCCTGGAAGGACAAGCAAACCGGCCAGCAGCAGGAACGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGCCGTCTCGCCGAGATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAAGTCTACGTCGAA
GGTTCCCTGCGTACCCGCGAGTGGGAAAAAGACGGCGTGAAGCGTTACACCACCGAAATCGTGGTCGACATCAACGGCCA
GATGCAGCTGCTCGGCGGCCGTCCTGGCAGCGAAGGCGACGCACCGCGTGCTCCGCGCCCGCAGCGCGAGCCGCAGCAGT
CTGCTCCGCAGCAGCGTCCGGCTCCGCAGCCAGCCGCCCAACCGGCTCCGGACTACGACAGCTTCGACGACGACATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.307

100

0.615
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.547
  ssb Neisseria meningitidis MC58

45.251

100

0.503
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.503