Detailed information NTG0928629

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: VSX76_RS16065
• Genome accession: NZ_CP143311
• Coordinates: 3004257..3005315 (-)
• Length: 352 a.a.
• NCBI ID: WP_273178429.1
• Uniprot ID: -
• Organism: Methylophaga thalassica strain IOM01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2999257..3010315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSX76_RS16040 (VSX76_16035)	aroK	2999800..3000351 (-)	552	WP_413661956.1	shikimate kinase AroK	-
VSX76_RS16045 (VSX76_16040)	pilQ	3000434..3002515 (-)	2082	WP_330110487.1	type IV pilus secretin PilQ	-
VSX76_RS16050 (VSX76_16045)	-	3002546..3003097 (-)	552	WP_330110488.1	pilus assembly protein PilP	-
VSX76_RS16055 (VSX76_16050)	-	3003110..3003697 (-)	588	WP_330110489.1	type 4a pilus biogenesis protein PilO	-
VSX76_RS16060 (VSX76_16055)	-	3003697..3004257 (-)	561	WP_273178428.1	PilN domain-containing protein	-
VSX76_RS16065 (VSX76_16060)	comM	3004257..3005315 (-)	1059	WP_273178429.1	pilus assembly protein PilM	Machinery gene
VSX76_RS16070 (VSX76_16065)	-	3005681..3007882 (+)	2202	WP_330110490.1	penicillin-binding protein 1A	-
VSX76_RS16075 (VSX76_16070)	-	3007884..3009374 (-)	1491	WP_050797507.1	M48 family metalloprotease	-
VSX76_RS16080 (VSX76_16075)	rpmE	3009400..3009600 (-)	201	WP_007143969.1	50S ribosomal protein L31	-
VSX76_RS16085 (VSX76_16080)	-	3009724..3010299 (-)	576	WP_007143970.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 38353.80 Da
• Isoelectric Point: 4.8314

>NTDB_id=928629 VSX76_RS16065 WP_273178429.1 3004257..3005315(-) (comM) [Methylophaga thalassica strain IOM01]
MFGRKKSPLLGIDISSSVVKVLELSKKGEKYTVESYSVEPLPVNAVVESRIENRDEVAGAIRRAVKRSGTKAKEAAVAVS
ANSAISKIVSFPASLSERELEENVLMEAENYIPYPLDEVRLDFEILGPSAADVEAVDVLLAASRRENVDVRTEVVEKAGL
KPRLVDVEAYTMENAFELIARQLPHHGQGLTVAVADVGATLTTLHVLVDGKIVFTREQTFGGRMLTEDIERHYGMSYQEA
GRAKKDGSLPDDYGPKVLEPFKRSMAMTVTRALQFFFSASTQYQSIDHIILAGGCASIEGIDTMIEEETGTSTSIANPFA
EMILGSRVKIQALSNDAPSMMIACGLAMRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=928629 VSX76_RS16065 WP_273178429.1 3004257..3005315(-) (comM) [Methylophaga thalassica strain IOM01]
ATGTTCGGACGAAAAAAATCCCCTTTGCTAGGCATAGATATCAGTTCTTCGGTAGTAAAGGTATTAGAACTGAGTAAAAA
AGGTGAGAAATATACTGTCGAGTCATATTCCGTTGAGCCTTTACCTGTCAATGCTGTGGTTGAAAGCCGCATTGAAAATA
GAGATGAAGTGGCTGGTGCAATAAGGCGCGCAGTCAAACGTTCAGGCACAAAAGCCAAAGAAGCCGCTGTTGCCGTTTCT
GCTAATTCAGCCATCAGTAAAATCGTATCTTTTCCTGCTTCATTATCAGAGCGTGAGCTTGAAGAAAATGTCCTTATGGA
AGCAGAAAACTATATTCCTTACCCACTTGATGAAGTACGACTGGATTTTGAAATATTAGGGCCTTCAGCAGCTGATGTTG
AAGCTGTTGATGTTCTGCTTGCTGCTTCACGCCGTGAAAATGTGGATGTCCGTACTGAGGTGGTCGAGAAAGCTGGATTA
AAACCCCGACTGGTCGATGTCGAAGCCTATACTATGGAAAATGCGTTTGAATTAATCGCTCGACAATTGCCACACCATGG
CCAGGGCTTGACGGTCGCCGTTGCTGATGTCGGTGCAACACTGACAACCTTACACGTACTGGTTGACGGTAAAATTGTTT
TTACCCGAGAGCAAACATTTGGCGGAAGAATGTTAACTGAAGATATTGAACGCCATTACGGGATGTCTTATCAGGAGGCG
GGGCGAGCGAAGAAAGATGGCAGTTTGCCAGATGATTATGGTCCGAAAGTGCTTGAACCTTTCAAGCGTTCAATGGCAAT
GACCGTAACACGAGCATTGCAATTCTTCTTTTCAGCATCGACACAATATCAGTCCATCGATCATATTATTCTGGCTGGAG
GGTGTGCTTCTATCGAAGGTATCGATACGATGATAGAAGAAGAAACCGGTACATCAACATCTATTGCTAATCCTTTTGCA
GAGATGATTCTGGGATCTCGGGTGAAAATACAGGCATTAAGTAATGATGCTCCTTCGATGATGATTGCTTGCGGCTTGGC
AATGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (11-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	49.432	100	0.494
pilM	Acinetobacter baumannii D1279779	48.295	100	0.483
comM	Acinetobacter nosocomialis M2	47.727	100	0.477
pilM	Legionella pneumophila strain ERS1305867	45.115	98.864	0.446