Detailed information NTG0928343

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB9K51_RS18720
• Genome accession: NZ_CP166757
• Coordinates: 3722525..3723517 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CRE287
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3717525..3728517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9K51_RS18700 (AB9K51_18705)	ygbM	3718156..3718932 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
AB9K51_RS18705 (AB9K51_18710)	ygbN	3719021..3720385 (+)	1365	WP_000104433.1	GntP family transporter	-
AB9K51_RS18710 (AB9K51_18715)	-	3720528..3721571 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AB9K51_RS18715 (AB9K51_18720)	-	3721796..3722347 (+)	552	WP_001179442.1	flavodoxin family protein	-
AB9K51_RS18720 (AB9K51_18725)	rpoS	3722525..3723517 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB9K51_RS18725 (AB9K51_18730)	nlpD	3723580..3724674 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB9K51_RS18730 (AB9K51_18735)	pcm	3724859..3725485 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AB9K51_RS18735 (AB9K51_18740)	surE	3725479..3726240 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB9K51_RS18740 (AB9K51_18745)	truD	3726221..3727270 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
AB9K51_RS18745 (AB9K51_18750)	ispF	3727267..3727746 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB9K51_RS18750 (AB9K51_18755)	ispD	3727746..3728456 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=928343 AB9K51_RS18720 WP_000081550.1 3722525..3723517(-) (rpoS) [Escherichia coli strain CRE287]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=928343 AB9K51_RS18720 WP_000081550.1 3722525..3723517(-) (rpoS) [Escherichia coli strain CRE287]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715