Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   U6151_RS05125 Genome accession   NZ_CP143257
Coordinates   1063761..1064060 (+) Length   99 a.a.
NCBI ID   WP_043578575.1    Uniprot ID   A0A2R2IW65
Organism   Chromobacterium subtsugae isolate delta-vioS     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058761..1069060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6151_RS05110 (U6151_05110) purB 1059842..1061212 (-) 1371 WP_043578566.1 adenylosuccinate lyase -
  U6151_RS05115 (U6151_05115) ffh 1061408..1062763 (-) 1356 WP_043578569.1 signal recognition particle protein -
  U6151_RS05120 (U6151_05120) - 1062879..1063700 (+) 822 WP_043578572.1 inner membrane protein YpjD -
  U6151_RS05125 (U6151_05125) comE 1063761..1064060 (+) 300 WP_043578575.1 helix-hairpin-helix domain-containing protein Machinery gene
  U6151_RS05130 (U6151_05130) - 1064477..1065658 (+) 1182 WP_043578577.1 porin -
  U6151_RS05135 (U6151_05135) pilF 1065858..1067564 (+) 1707 WP_043578580.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U6151_RS05140 (U6151_05140) pilC 1067617..1068840 (+) 1224 WP_043578583.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10264.17 Da        Isoelectric Point: 10.6974

>NTDB_id=928316 U6151_RS05125 WP_043578575.1 1063761..1064060(+) (comE) [Chromobacterium subtsugae isolate delta-vioS]
MKKLFAAFAGLMLLCNFAWAAVNLNTATAPQLEALQGIGPAKAKAIIDYRAKNGPFKTVDDLKKVSGIGDKTLDKLRKDL
TVGGAAPAAKPGAKPVAAK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=928316 U6151_RS05125 WP_043578575.1 1063761..1064060(+) (comE) [Chromobacterium subtsugae isolate delta-vioS]
ATGAAGAAGCTGTTCGCTGCCTTTGCCGGCCTGATGCTGCTGTGCAATTTCGCCTGGGCCGCCGTCAACCTGAACACCGC
CACCGCGCCGCAACTGGAGGCGCTGCAGGGAATCGGCCCGGCCAAGGCCAAGGCTATCATCGACTACCGCGCCAAAAACG
GTCCGTTCAAGACGGTGGATGATTTGAAGAAGGTTTCCGGCATCGGCGACAAGACGCTGGATAAGCTGCGCAAGGACCTG
ACCGTGGGCGGCGCGGCGCCGGCCGCCAAACCGGGCGCCAAGCCGGTGGCCGCCAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R2IW65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.333

96.97

0.566
  comE Neisseria gonorrhoeae MS11

58.333

96.97

0.566
  comE Neisseria gonorrhoeae MS11

58.333

96.97

0.566
  comE Neisseria gonorrhoeae MS11

58.333

96.97

0.566
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.439

82.828

0.434
  comEA Streptococcus thermophilus LMD-9

59.016

61.616

0.364