Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V1209_RS09195 Genome accession   NZ_CP143255
Coordinates   1987717..1988871 (+) Length   384 a.a.
NCBI ID   WP_009875464.1    Uniprot ID   A3N310
Organism   Actinobacillus pleuropneumoniae strain ZJNH2023     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1982717..1993871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1209_RS09165 (V1209_09145) - 1982831..1983568 (+) 738 Protein_1763 hypothetical protein -
  V1209_RS09170 (V1209_09150) - 1983692..1983880 (-) 189 WP_005599189.1 hypothetical protein -
  V1209_RS09175 (V1209_09155) - 1983914..1984348 (+) 435 WP_009875461.1 factor H binding protein domain-containing protein -
  V1209_RS09180 (V1209_09160) - 1984651..1985893 (+) 1243 Protein_1766 surface lipoprotein assembly modifier -
  V1209_RS09185 (V1209_09165) rfaD 1985953..1986879 (-) 927 WP_005599195.1 ADP-glyceromanno-heptose 6-epimerase -
  V1209_RS09190 (V1209_09170) def 1987019..1987531 (-) 513 WP_005599196.1 peptide deformylase -
  V1209_RS09195 (V1209_09175) dprA 1987717..1988871 (+) 1155 WP_009875464.1 DNA-processing protein DprA Machinery gene
  V1209_RS09200 (V1209_09180) - 1988915..1990921 (-) 2007 WP_011848643.1 oligopeptide transporter, OPT family -
  V1209_RS09205 (V1209_09185) - 1991143..1992498 (-) 1356 WP_354732063.1 PTS ascorbate transporter subunit IIC -
  V1209_RS09210 (V1209_09190) - 1992507..1992779 (-) 273 WP_005599206.1 PTS sugar transporter subunit IIB -
  V1209_RS09215 (V1209_09195) secE 1993082..1993495 (+) 414 WP_005602526.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42831.05 Da        Isoelectric Point: 5.4205

>NTDB_id=928296 V1209_RS09195 WP_009875464.1 1987717..1988871(+) (dprA) [Actinobacillus pleuropneumoniae strain ZJNH2023]
MSQADLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIDNALTWAERPNQHLLSLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFSEQLVKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPWQQALFEPPQAVENAQFFTKADVPNKVN
HLAKKLPELTACQQQIVAHISLEPISIDDLAKATSLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=928296 V1209_RS09195 WP_009875464.1 1987717..1988871(+) (dprA) [Actinobacillus pleuropneumoniae strain ZJNH2023]
ATGTCTCAGGCTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAACGCTGGT
TCAATCCGGAAATGCGTTGGATTGATAATGCTCTCACGTGGGCGGAGCGGCCGAATCAACACTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGCAGTTTGAG
CTTGCCGCAAATTGCGATTGTCGGTAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTAGCGAGCAAT
TGGTTAAACATCATTTGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAAAATTTCCCTCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACGTTAGTGGTGGAAGCCACATTAAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGAACAAGGGCGAGAAGTGTTTGCATTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTTTTAACCGAAACGATAGAGGATATTTTACAGGCAATTCAATATCAACTGCCGGATCAGCCTTGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGTTGAAAACGCACAATTTTTTACAAAAGCAGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAATTGACCGCTTGTCAGCAACAAATTGTGGCGCATATTAGTCTTGAACCGATTTCGAT
TGACGATTTGGCTAAGGCGACTTCATTGGAGGTGGAAACACTGTTAGTCGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTAAGCGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

75.198

98.698

0.742
  dprA Vibrio campbellii strain DS40M4

46.719

99.219

0.464
  dprA Haemophilus influenzae Rd KW20

49.28

90.365

0.445
  dprA Vibrio cholerae strain A1552

41.86

100

0.422
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375