Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8965_RS07565 Genome accession   NZ_AP028338
Coordinates   1414999..1416009 (+) Length   336 a.a.
NCBI ID   WP_002777794.1    Uniprot ID   A0ABP2NSK5
Organism   Campylobacter coli strain BCH-10307     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1409999..1421009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8965_RS07550 (B10307_14930) - 1411658..1413931 (-) 2274 WP_002826766.1 autotransporter outer membrane beta-barrel domain-containing protein -
  R8965_RS07560 (B10307_14940) - 1414497..1414907 (-) 411 WP_002822448.1 histidine phosphotransferase -
  R8965_RS07565 (B10307_14950) ruvB 1414999..1416009 (+) 1011 WP_002777794.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8965_RS07570 (B10307_14960) - 1416019..1417062 (+) 1044 WP_002777797.1 AI-2E family transporter -
  R8965_RS07575 (B10307_14970) fumC 1417109..1418500 (-) 1392 WP_002777799.1 class II fumarate hydratase -
  R8965_RS07580 (B10307_14980) glmS 1418635..1420431 (-) 1797 WP_002777801.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37570.98 Da        Isoelectric Point: 4.7834

>NTDB_id=92775 R8965_RS07565 WP_002777794.1 1414999..1416009(+) (ruvB) [Campylobacter coli strain BCH-10307]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETIT
KERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
FSVLKLNYEQTLFDEN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=92775 R8965_RS07565 WP_002777794.1 1414999..1416009(+) (ruvB) [Campylobacter coli strain BCH-10307]
ATGGACAGAATAGTAGAAATAGAAAAATATTCTTTTGACGAAACTTATGAAACTTCTCTGCGTCCTTCAAATTTCGATGG
CTACATAGGACAAGAAAACATTAAAAAAAATTTAAATGTTTTTATTAGCGCTGCAAAAAAAAGAAATGAATGCTTAGACC
ATATACTTTTTAGTGGGCCTGCAGGACTTGGCAAAACTACATTGGCTAATATTATTTCTTATGAGATGGGTGCAAATATC
AAAACAACTGCGGCTCCTATGATAGAAAAAAGCGGGGATTTGGCTGCAATTTTAACCAATTTAAGCGAAGGAGATGTGCT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATTGAAGAAGTACTTTACCCTGCAATGGAAGATTATAGGCTAGATA
TCATCATCGGTAGTGGCCCTGCAGCACAAACTATAAAAATCGATTTGCCTAAATTTACACTTATTGGCGCTACAACCCGT
GCAGGAATGCTTAGCAATCCTTTAAGAGATCGTTTTGGAATGCAATTTAGACTTGAATTTTATAAAGATGAAGAGCTTGC
TATCATACTTCAAAAAGCTGCACTAAAGCTCAATAAAAGCTGTGAAAATGAAGCTGCACTTGAGATTGCCAAAAGAAGTC
GCTCTACTCCTAGAATCGCACTTAGACTTTTAAAAAGAGTGAGAGATTTTGCAGATGTAAATGACGAAGAAACGATCACC
AAAGAAAGGGCTAAAGAAGCATTAAATTCTTTAGGTGTCAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTAGA
GCTTTTAACAGAGGCTAAAAGAAAGCCTATAGGACTTTCTAGTATAGCGGCAGCTTTGAGTGAAGATGAAAATACTATTG
AAGATGTAATCGAACCTTATTTGCTTGCAAATGGCTACATAGAACGCACTGCCAAAGGTCGTATAGCAAGTACAAAAAGT
TTTAGTGTACTTAAGCTTAATTACGAACAAACTTTATTTGATGAAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

68.862

99.405

0.685
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.374

97.024

0.518
  ruvB Streptococcus pneumoniae TIGR4

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae R6

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae D39

48.338

98.512

0.476
  ruvB Synechocystis sp. PCC 6803

49.841

93.75

0.467