Detailed information NTG0927534

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: VP464_RS13235
• Genome accession: NZ_CP142892
• Coordinates: 2738549..2739250 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain B20AB01
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2733549..2744250

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP464_RS13205 (VP464_13225)	-	2733855..2734298 (-)	444	WP_001246675.1	SRPBCC family protein	-
VP464_RS13210 (VP464_13230)	tadA	2734368..2734871 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
VP464_RS13215 (VP464_13235)	-	2734878..2736002 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
VP464_RS13220 (VP464_13240)	ung	2735999..2736712 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
VP464_RS13225 (VP464_13245)	-	2736763..2737359 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
VP464_RS13230 (VP464_13250)	gspK	2737590..2738549 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
VP464_RS13235 (VP464_13255)	xcpW	2738549..2739250 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
VP464_RS13240 (VP464_13260)	xcpV	2739250..2739630 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
VP464_RS13245 (VP464_13265)	-	2739620..2740174 (-)	555	WP_000841373.1	type II secretion system protein	-
VP464_RS13250 (VP464_13270)	-	2740184..2740792 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
VP464_RS13255 (VP464_13275)	-	2740830..2741603 (-)	774	WP_000497298.1	TatD family hydrolase	-
VP464_RS13260 (VP464_13280)	-	2741621..2741962 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
VP464_RS13265 (VP464_13285)	-	2741974..2742954 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
VP464_RS13270 (VP464_13290)	kdsB	2742966..2743727 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=927534 VP464_RS13235 WP_000594589.1 2738549..2739250(-) (xcpW) [Acinetobacter baumannii strain B20AB01]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=927534 VP464_RS13235 WP_000594589.1 2738549..2739250(-) (xcpW) [Acinetobacter baumannii strain B20AB01]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996