Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VXM67_RS24375 Genome accession   NZ_CP142890
Coordinates   5333006..5333542 (-) Length   178 a.a.
NCBI ID   WP_023382618.1    Uniprot ID   A0A964M0Y5
Organism   Pseudomonas sp. Rh2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5328006..5338542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM67_RS24355 (VXM67_24315) - 5328425..5329186 (-) 762 WP_104881184.1 SDR family NAD(P)-dependent oxidoreductase -
  VXM67_RS24360 (VXM67_24320) - 5329211..5329996 (-) 786 WP_023382615.1 TSUP family transporter -
  VXM67_RS24365 (VXM67_24325) - 5330027..5331052 (-) 1026 WP_023382616.1 TauD/TfdA family dioxygenase -
  VXM67_RS24370 (VXM67_24330) - 5331495..5332886 (+) 1392 WP_027907534.1 PLP-dependent aminotransferase family protein -
  VXM67_RS24375 (VXM67_24335) ssb 5333006..5333542 (-) 537 WP_023382618.1 single-stranded DNA-binding protein Machinery gene
  VXM67_RS24380 (VXM67_24340) - 5333552..5334946 (-) 1395 WP_023382619.1 MFS transporter -
  VXM67_RS24385 (VXM67_24345) uvrA 5335076..5337910 (+) 2835 WP_023382620.1 excinuclease ABC subunit UvrA -
  VXM67_RS24390 (VXM67_24350) bfr 5337967..5338431 (-) 465 WP_023382621.1 bacterioferritin -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19830.95 Da        Isoelectric Point: 5.9312

>NTDB_id=927493 VXM67_RS24375 WP_023382618.1 5333006..5333542(-) (ssb) [Pseudomonas sp. Rh2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQGGDPYNQGGGNYGGQQQYNQAPRQQAPRPQQAPQRPAPQQ
PAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=927493 VXM67_RS24375 WP_023382618.1 5333006..5333542(-) (ssb) [Pseudomonas sp. Rh2]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGTGAGCAGTGGACCGACAAGCAGTCCGGTCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCTGGTGAATACCTGCGCAAGGGTTCCCAAGTCTACATCGAG
GGCAAGCTGCAGACTCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCGCAGAACCAGCAACAGGGCGGCGACCCCTACAACCAGGGTGGCGGCAACTACGGTG
GCCAGCAGCAGTACAACCAGGCACCGCGCCAGCAGGCCCCACGTCCGCAACAGGCACCACAGCGTCCCGCGCCGCAGCAG
CCAGCTCCACAGCCAGCCGCCGACTTCGATAGCTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.584
  ssb Neisseria meningitidis MC58

50.829

100

0.517
  ssb Neisseria gonorrhoeae MS11

50.829

100

0.517
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.511