Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HQS1_RS30705 | Genome accession | NZ_AP025556 |
| Coordinates | 6716996..6717562 (+) | Length | 188 a.a. |
| NCBI ID | WP_016449346.1 | Uniprot ID | - |
| Organism | Delftia lacustris strain HQS1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6711996..6722562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQS1_RS30695 (HQS1_60760) | uvrA | 6712280..6715387 (-) | 3108 | WP_244387641.1 | excinuclease ABC subunit UvrA | - |
| HQS1_RS30700 (HQS1_60770) | - | 6715661..6716836 (+) | 1176 | WP_244451735.1 | MFS transporter | - |
| HQS1_RS30705 (HQS1_60780) | ssb | 6716996..6717562 (+) | 567 | WP_016449346.1 | single-stranded DNA-binding protein | Machinery gene |
| HQS1_RS30710 (HQS1_60790) | - | 6717649..6718146 (+) | 498 | WP_016449345.1 | hypothetical protein | - |
| HQS1_RS30715 (HQS1_60800) | - | 6718473..6719927 (+) | 1455 | WP_244387642.1 | SulP family inorganic anion transporter | - |
| HQS1_RS30720 (HQS1_60810) | - | 6720324..6720632 (+) | 309 | WP_223275368.1 | hypothetical protein | - |
| HQS1_RS30725 (HQS1_60820) | - | 6720635..6721327 (+) | 693 | WP_016449342.1 | hypothetical protein | - |
| HQS1_RS30730 (HQS1_60830) | paaE | 6721361..6722458 (-) | 1098 | WP_047218904.1 | 1,2-phenylacetyl-CoA epoxidase subunit PaaE | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20403.55 Da Isoelectric Point: 5.9554
>NTDB_id=92697 HQS1_RS30705 WP_016449346.1 6716996..6717562(+) (ssb) [Delftia lacustris strain HQS1]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF
Nucleotide
Download Length: 567 bp
>NTDB_id=92697 HQS1_RS30705 WP_016449346.1 6716996..6717562(+) (ssb) [Delftia lacustris strain HQS1]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTATGGCGATGAAGGCTATGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCCCCCGCACCCATGGCACCCCCGCCGCAGCGCGCAGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTTTGA
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTATGGCGATGAAGGCTATGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCCCCCGCACCCATGGCACCCCCGCCGCAGCGCGCAGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
53.333 |
100 |
0.553 |
| ssb | Glaesserella parasuis strain SC1401 |
53.093 |
100 |
0.548 |
| ssb | Neisseria gonorrhoeae MS11 |
46.032 |
100 |
0.463 |
| ssb | Neisseria meningitidis MC58 |
44.974 |
100 |
0.452 |