Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VO226_RS01250 Genome accession   NZ_CP142770
Coordinates   267494..268111 (+) Length   205 a.a.
NCBI ID   WP_013331020.1    Uniprot ID   E1V5N6
Organism   Halomonas elongata strain SEK2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 262494..273111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO226_RS01240 (VO226_01240) uvrA 262987..265848 (-) 2862 WP_013331018.1 excinuclease ABC subunit UvrA -
  VO226_RS01245 (VO226_01245) - 266006..267400 (+) 1395 WP_013331019.1 MFS transporter -
  VO226_RS01250 (VO226_01250) ssb 267494..268111 (+) 618 WP_013331020.1 single-stranded DNA-binding protein Machinery gene
  VO226_RS01255 (VO226_01255) - 268196..269362 (-) 1167 WP_328716942.1 arylamine N-acetyltransferase -
  VO226_RS01260 (VO226_01260) - 269606..270499 (+) 894 WP_328716943.1 sugar nucleotide-binding protein -
  VO226_RS01265 (VO226_01265) - 270496..271260 (+) 765 WP_013331023.1 lysophospholipid acyltransferase family protein -
  VO226_RS01270 (VO226_01270) fabB 271343..272557 (-) 1215 WP_013331024.1 beta-ketoacyl-ACP synthase I -
  VO226_RS01275 (VO226_01275) fabA 272571..273086 (-) 516 WP_013331025.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22287.25 Da        Isoelectric Point: 4.9464

>NTDB_id=926698 VO226_RS01250 WP_013331020.1 267494..268111(+) (ssb) [Halomonas elongata strain SEK2]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWTDRQSGQRQERTEWHRVVMFNKLAEISQQYLRKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGEMGGAPQGGFGGGQPQQQQQGGFGGQPQQQPQGGFGGQPQQPPQQQ
GGNYGGGQPQRPPQQPAPNQGGQQGGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 618 bp        

>NTDB_id=926698 VO226_RS01250 WP_013331020.1 267494..268111(+) (ssb) [Halomonas elongata strain SEK2]
ATGGCCCGTGGCGTCAACAAGGTCATACTCATCGGCAACCTCGGGCAGGACCCGGAAGTGCGCTTCACGCCCTCCGGTAC
CGCGGTGGCCAACCTCAACCTGGCAACCACCGATACCTGGACCGACCGTCAGAGCGGTCAGCGTCAGGAACGTACCGAGT
GGCACCGGGTGGTGATGTTCAACAAGCTGGCCGAGATTTCCCAGCAGTACCTGCGCAAGGGCTCCAAGGTGTATATCGAG
GGGCGCCTGCAGACTCGCAAGTGGCAGGACCAGAACGGTCAGGACCGTTACAGCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACTCGCGCGGCGGCGAGATGGGCGGCGCCCCGCAGGGTGGCTTCGGTGGCGGCCAGCCGCAGCAGCAACAGC
AGGGCGGCTTTGGTGGCCAGCCCCAGCAGCAGCCGCAAGGTGGTTTCGGCGGCCAGCCGCAGCAACCGCCGCAGCAGCAA
GGTGGCAACTATGGCGGTGGTCAGCCGCAGCGTCCGCCGCAGCAGCCGGCCCCCAACCAGGGTGGCCAGCAGGGCGGCAA
CTATGGTGCCCCCGACCCGGGCAGCTTCGACGACTTCGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E1V5N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.923

100

0.527
  ssb Glaesserella parasuis strain SC1401

49.02

99.512

0.488
  ssb Neisseria meningitidis MC58

44.335

99.024

0.439
  ssb Neisseria gonorrhoeae MS11

44.059

98.537

0.434