Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VJ143_RS00980 Genome accession   NZ_CP142740
Coordinates   213874..214482 (+) Length   202 a.a.
NCBI ID   WP_004718569.1    Uniprot ID   A0A6A1RT07
Organism   Acinetobacter guillouiae strain 13-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 208874..219482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS00960 (VJ143_00960) - 209451..209990 (-) 540 WP_262781994.1 PAAR domain-containing protein -
  VJ143_RS00965 (VJ143_00965) tenA 210331..211002 (-) 672 WP_327857989.1 thiaminase II -
  VJ143_RS00970 (VJ143_00970) - 211237..212319 (+) 1083 WP_171252558.1 DUF475 domain-containing protein -
  VJ143_RS00975 (VJ143_00975) - 212458..213822 (+) 1365 WP_034611303.1 MFS transporter -
  VJ143_RS00980 (VJ143_00980) ssb 213874..214482 (+) 609 WP_004718569.1 single-stranded DNA-binding protein Machinery gene
  VJ143_RS00985 (VJ143_00985) - 214566..215030 (-) 465 WP_327857990.1 hotdog fold domain-containing protein -
  VJ143_RS00990 (VJ143_00990) - 215181..215816 (+) 636 WP_234623390.1 TetR/AcrR family transcriptional regulator -
  VJ143_RS00995 (VJ143_00995) - 215849..216184 (-) 336 WP_056517215.1 hypothetical protein -
  VJ143_RS01000 (VJ143_01000) ahpC 216404..216967 (+) 564 WP_004718560.1 alkyl hydroperoxide reductase subunit C -
  VJ143_RS01005 (VJ143_01005) - 217035..217958 (-) 924 WP_034611312.1 LysR substrate-binding domain-containing protein -
  VJ143_RS01010 (VJ143_01010) ycaC 218090..218716 (-) 627 WP_004818434.1 isochorismate family cysteine hydrolase YcaC -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21878.59 Da        Isoelectric Point: 6.4829

>NTDB_id=926628 VJ143_RS00980 WP_004718569.1 213874..214482(+) (ssb) [Acinetobacter guillouiae strain 13-3]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEGAAADNGGYNQPRFNNNQQGGFNNNQGGGGYANQGNQGGGYGNA
NPQGGYGNGGNNVNQGFQSPKPAAAPSAPTAAPADLDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=926628 VJ143_RS00980 WP_004718569.1 213874..214482(+) (ssb) [Acinetobacter guillouiae strain 13-3]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTAGGTCGTGATCCTGAGACTAAAACTTTCCCAAATGGGGGTTC
TCTCACTCAATTTTCAATTGCGACAAGTGAATCTTGGACAGACAAAAATTCCGGTGAAAGAAAAGAACAAACGGAATGGC
ATCGTATTGTATTGCACAACCGTTTAGGTGAGATTGCACAGCAGTATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCTTTACGTACCCGTCAGTGGACGGATCAAAATGGTCAAGAGCGCTATACCACTGAAATTCGTGGCGAACAAATGCAGAT
GCTTGATAACAACCGTCAACAAGGTGAAGGCGCTGCTGCTGACAATGGTGGTTATAACCAACCACGTTTCAATAACAACC
AGCAAGGTGGTTTTAACAACAACCAAGGCGGTGGTGGTTATGCGAATCAAGGTAATCAAGGCGGTGGTTACGGCAATGCC
AATCCACAAGGTGGCTATGGCAATGGCGGAAACAATGTAAACCAAGGTTTTCAATCGCCTAAACCTGCAGCTGCACCATC
AGCACCTACTGCTGCCCCTGCGGATTTGGATGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A1RT07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.51

100

0.5
  ssb Vibrio cholerae strain A1552

42.927

100

0.436
  ssb Neisseria meningitidis MC58

38.942

100

0.401
  ssb Neisseria gonorrhoeae MS11

38.942

100

0.401