Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VIJ98_RS01655 Genome accession   NZ_CP142688
Coordinates   371657..372211 (+) Length   184 a.a.
NCBI ID   WP_008109965.1    Uniprot ID   -
Organism   Pantoea sp. S18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 366657..377211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIJ98_RS01640 (VIJ98_01640) - 366974..367324 (+) 351 WP_008109961.1 MmcQ/YjbR family DNA-binding protein -
  VIJ98_RS01645 (VIJ98_01645) - 367331..368395 (-) 1065 WP_061718370.1 NAD(P)-dependent alcohol dehydrogenase -
  VIJ98_RS01650 (VIJ98_01650) uvrA 368606..371434 (-) 2829 WP_008109963.1 excinuclease ABC subunit UvrA -
  VIJ98_RS01655 (VIJ98_01655) ssb 371657..372211 (+) 555 WP_008109965.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VIJ98_RS01660 (VIJ98_01660) - 372312..372839 (-) 528 WP_008109967.1 isochorismatase family protein -
  VIJ98_RS01665 (VIJ98_01665) - 372963..373793 (+) 831 WP_323271953.1 AraC family transcriptional regulator -
  VIJ98_RS01670 (VIJ98_01670) - 373866..374819 (+) 954 WP_323271955.1 DMT family transporter -
  VIJ98_RS01675 (VIJ98_01675) - 375752..376147 (-) 396 WP_008109970.1 IS3 family transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19712.66 Da        Isoelectric Point: 5.2456

>NTDB_id=926432 VIJ98_RS01655 WP_008109965.1 371657..372211(+) (ssb) [Pantoea sp. S18]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKTTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGQEKYTTEVVVNVGGTMQMLGGRQQGANAGGAPSGGQGGGNNNGWGQPQQPQQQPQGGGNQFSGGAQ
QRPQQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=926432 VIJ98_RS01655 WP_008109965.1 371657..372211(+) (ssb) [Pantoea sp. S18]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTAGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCAAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAAAGCTGGCGCGACAAAACAACCGGTGAAAACAAAGAGATCACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCTGGCGAATACCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCCAGGAAAAATACACCACTGAAGTGGTAGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGACGTCAGCAGGGCGCGAACGCAGGTGGTGCACCTTCGGGCGGCCAGGGCGGCGGCA
ATAACAACGGTTGGGGCCAGCCACAGCAGCCACAACAGCAGCCGCAGGGCGGTGGTAACCAGTTCAGCGGTGGTGCGCAA
CAGCGTCCACAGCAGCAGAGCGCACCAGCCAACAACGAACCGCCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.37

100

0.723
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.576
  ssb Neisseria meningitidis MC58

45.556

97.826

0.446
  ssb Neisseria gonorrhoeae MS11

45.556

97.826

0.446