Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VOI35_RS09225 Genome accession   NZ_CP142685
Coordinates   1978831..1979364 (-) Length   177 a.a.
NCBI ID   WP_407275756.1    Uniprot ID   -
Organism   Halothiobacillus sp. DCM-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1973831..1984364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI35_RS09205 (VOI35_09190) - 1974222..1974560 (+) 339 WP_407275752.1 P-II family nitrogen regulator -
  VOI35_RS09210 (VOI35_09195) - 1974572..1975879 (+) 1308 WP_407275753.1 ammonium transporter -
  VOI35_RS09215 (VOI35_09200) - 1976106..1977554 (+) 1449 WP_407275754.1 DegQ family serine endoprotease -
  VOI35_RS09220 (VOI35_09205) ribF 1977795..1978754 (-) 960 WP_407275755.1 bifunctional riboflavin kinase/FAD synthetase -
  VOI35_RS09225 (VOI35_09210) ssb 1978831..1979364 (-) 534 WP_407275756.1 single-stranded DNA-binding protein Machinery gene
  VOI35_RS09230 (VOI35_09215) uvrA 1979628..1982459 (+) 2832 WP_407275757.1 excinuclease ABC subunit UvrA -
  VOI35_RS09235 (VOI35_09220) - 1982493..1983926 (-) 1434 WP_407275758.1 ATP-binding protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18886.76 Da        Isoelectric Point: 5.9467

>NTDB_id=926421 VOI35_RS09225 WP_407275756.1 1978831..1979364(-) (ssb) [Halothiobacillus sp. DCM-1]
MASRGINKVIILGNLGQDPEVRYMPSGGQVTNIRVATSESWRDKDTGEQKETTEWHRIVFFNKLAEIAGQYLKKGSQVYV
EGTLKTRKWQGQDGQDRYTTEIVASEMQMLGGRSGGSGGGNTDAGGYDDGYSSAPPARSGGRPGAPSGGGRDSYGAPPAR
PAPSKAPNDFVDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=926421 VOI35_RS09225 WP_407275756.1 1978831..1979364(-) (ssb) [Halothiobacillus sp. DCM-1]
ATGGCCAGTCGCGGAATCAACAAAGTCATCATCCTGGGCAACTTAGGCCAAGACCCCGAAGTGCGCTACATGCCGAGCGG
CGGGCAGGTCACGAATATCCGCGTCGCTACATCCGAGAGCTGGCGCGATAAAGACACCGGCGAGCAAAAAGAAACCACCG
AATGGCACCGCATCGTGTTCTTCAACAAGTTGGCGGAAATCGCCGGGCAATATCTGAAAAAGGGCAGCCAGGTCTATGTC
GAAGGCACCCTGAAAACCCGCAAATGGCAGGGGCAGGACGGGCAAGATCGATACACCACGGAAATCGTCGCCAGCGAAAT
GCAGATGCTCGGTGGCCGGAGCGGCGGATCGGGCGGCGGTAACACCGATGCTGGCGGTTATGACGACGGCTACAGCAGCG
CCCCGCCTGCCCGAAGCGGTGGGCGCCCAGGCGCTCCATCCGGCGGCGGGCGAGACAGTTACGGTGCCCCCCCAGCGCGC
CCTGCACCCAGCAAAGCACCGAATGACTTTGTCGATGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.989

100

0.599
  ssb Glaesserella parasuis strain SC1401

52.66

100

0.559
  ssb Neisseria gonorrhoeae MS11

51.149

98.305

0.503
  ssb Neisseria meningitidis MC58

50.575

98.305

0.497