Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   AB4K06_RS16665 Genome accession   NZ_CP163458
Coordinates   3130472..3131167 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain N33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3125472..3136167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4K06_RS16640 (AB4K06_16640) minD 3126408..3127214 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  AB4K06_RS16645 (AB4K06_16645) minC 3127216..3127896 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  AB4K06_RS16650 (AB4K06_16650) mreD 3127949..3128467 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  AB4K06_RS16655 (AB4K06_16655) mreC 3128464..3129336 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  AB4K06_RS16660 (AB4K06_16660) mreB 3129367..3130380 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AB4K06_RS16665 (AB4K06_16665) ysxA/radC 3130472..3131167 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  AB4K06_RS16670 (AB4K06_16670) maf 3131204..3131773 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  AB4K06_RS16675 (AB4K06_16675) spoIIB 3131926..3132924 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  AB4K06_RS16680 (AB4K06_16680) comC 3133058..3133804 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  AB4K06_RS16685 (AB4K06_16685) folC 3133944..3135236 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=926201 AB4K06_RS16665 WP_003246034.1 3130472..3131167(-) (ysxA/radC) [Bacillus subtilis strain N33]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=926201 AB4K06_RS16665 WP_003246034.1 3130472..3131167(-) (ysxA/radC) [Bacillus subtilis strain N33]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424