Detailed information NTG0926169

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: VMR32_RS02010
• Genome accession: NZ_CP142601
• Coordinates: 432032..433180 (+)
• Length: 382 a.a.
• NCBI ID: WP_003100959.1
• Uniprot ID: G3XCX3
• Organism: Pseudomonas aeruginosa strain Tongji
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 427032..438180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VMR32_RS01985 (VMR32_01985)	-	428183..428479 (-)	297	WP_031628111.1	DUF167 domain-containing protein	-
VMR32_RS01990 (VMR32_01990)	-	428476..429069 (-)	594	WP_003084544.1	YggT family protein	-
VMR32_RS01995 (VMR32_01995)	proC	429080..429901 (-)	822	WP_003084546.1	pyrroline-5-carboxylate reductase	-
VMR32_RS02000 (VMR32_02000)	-	429913..430605 (-)	693	WP_003084549.1	YggS family pyridoxal phosphate-dependent enzyme	-
VMR32_RS02005 (VMR32_02005)	pilT	430820..431854 (+)	1035	WP_003084552.1	type IV pilus twitching motility protein PilT	Machinery gene
VMR32_RS02010 (VMR32_02010)	pilU	432032..433180 (+)	1149	WP_003100959.1	type IV pilus ATPase PilU	Machinery gene
VMR32_RS02015 (VMR32_02015)	czcD	433188..434087 (-)	900	WP_003100957.1	CDF family zinc transporter CzcD	-
VMR32_RS02020 (VMR32_02020)	-	434242..434646 (+)	405	WP_003084560.1	NINE protein	-
VMR32_RS02025 (VMR32_02025)	-	434889..436262 (+)	1374	WP_015502220.1	pyridoxal-phosphate dependent enzyme	-
VMR32_RS02030 (VMR32_02030)	-	436259..437443 (+)	1185	WP_034014750.1	cystathionine gamma-synthase	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 42532.81 Da
• Isoelectric Point: 6.7792

>NTDB_id=926169 VMR32_RS02010 WP_003100959.1 432032..433180(+) (pilU) [Pseudomonas aeruginosa strain Tongji]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIED
PIEYIHQHQGCIVTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALERI
IHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYQLYTQGEITYEDALAHADSANDLRLMIKLGSESDADHLSSLTQGLSLEITDDDPAGRRFR

Nucleotide

• Length: 1149 bp

>NTDB_id=926169 VMR32_RS02010 WP_003100959.1 432032..433180(+) (pilU) [Pseudomonas aeruginosa strain Tongji]
ATGGAATTCGAAAAGCTGCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTACCGCCGTC
GATGAAGGTCAACGGCCGGGTGATGCCGGTGACCAAGACGCCGCTGTCGCCGGAGCAGACCCGCGAGACCGTGCTAGGCG
TGATGAACGAGCAGCAGCGCCGCGATTTCGCCGAGAACCATGAGTGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTATTGCGCCGGATCGAGACCAACATCCCGACCCTGGA
AGAGCTGAAGCTCCCGGAAATCCTCAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGATCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACTCCACCGGGCACATCATCTCCATCGAGGAC
CCGATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGCGAGGTGGGGCTGGACACCGACTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCTCGCGGGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACCCTGCACGCGAACAACGCCAACCAGGCGCTGGAGCGGATC
ATCCACTTCTTCCCGGCCGACCGTCATGGCCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGCTGAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACCAGCTCTACACCCAGGGCGAGATCACCTACGAGGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGTCT
GATGATCAAGCTCGGTTCGGAAAGCGACGCCGACCACCTGTCGAGCCTGACCCAGGGCCTGAGCCTGGAAATCACCGACG
ATGACCCTGCCGGCCGGCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

3D structure

• AlphaFold DB: G3XCX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	88.482	100	0.885
pilU	Acinetobacter baylyi ADP1	65.266	93.455	0.61
pilU	Vibrio cholerae strain A1552	60.286	91.623	0.552
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	88.743	0.382