Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OX462_RS01175 Genome accession   NZ_CP142524
Coordinates   272877..273392 (+) Length   171 a.a.
NCBI ID   WP_034754418.1    Uniprot ID   A0A853SUJ8
Organism   Janthinobacterium sp. SUN098     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 267877..278392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX462_RS01165 (OX462_01165) - 269012..269578 (+) 567 WP_409027587.1 hypothetical protein -
  OX462_RS01170 (OX462_01170) uvrA 269646..272495 (-) 2850 WP_070312201.1 excinuclease ABC subunit UvrA -
  OX462_RS01175 (OX462_01175) ssb 272877..273392 (+) 516 WP_034754418.1 single-stranded DNA-binding protein Machinery gene
  OX462_RS01180 (OX462_01180) - 273587..274066 (+) 480 WP_070292010.1 DUF1203 domain-containing protein -
  OX462_RS01185 (OX462_01185) - 274063..274479 (-) 417 WP_409027588.1 hypothetical protein -
  OX462_RS01190 (OX462_01190) - 274768..275547 (+) 780 WP_409027589.1 acetoin reductase -
  OX462_RS01195 (OX462_01195) - 275690..276196 (+) 507 WP_162995795.1 GNAT family N-acetyltransferase -
  OX462_RS01200 (OX462_01200) - 276203..277051 (-) 849 WP_099411336.1 hypothetical protein -
  OX462_RS01205 (OX462_01205) - 277217..277783 (+) 567 WP_409027590.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18192.35 Da        Isoelectric Point: 5.9416

>NTDB_id=926036 OX462_RS01175 WP_034754418.1 272877..273392(+) (ssb) [Janthinobacterium sp. SUN098]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGGGYDAPAPRQAPAPRPAPAPAPRPAPKPAP
NFSDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=926036 OX462_RS01175 WP_034754418.1 272877..273392(+) (ssb) [Janthinobacterium sp. SUN098]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGCTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGCCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGTGGTGGCGGTGGCGGCGGTTACG
ACGCCCCGGCCCCGCGCCAGGCGCCTGCCCCGCGTCCAGCTCCGGCACCGGCGCCACGCCCGGCACCGAAGCCAGCGCCG
AACTTCTCGGATATGGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SUJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

51.111

100

0.538
  ssb Neisseria meningitidis MC58

50.556

100

0.532
  ssb Glaesserella parasuis strain SC1401

49.724

100

0.526
  ssb Vibrio cholerae strain A1552

50.279

100

0.526