Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OPV09_RS00230 Genome accession   NZ_CP142523
Coordinates   53855..54370 (-) Length   171 a.a.
NCBI ID   WP_034754418.1    Uniprot ID   A0A853SUJ8
Organism   Janthinobacterium sp. TB1-E2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 48855..59370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPV09_RS00215 (OPV09_00215) - 51755..52534 (-) 780 WP_034754412.1 acetoin reductase -
  OPV09_RS00220 (OPV09_00220) - 52768..53184 (+) 417 WP_072457520.1 hypothetical protein -
  OPV09_RS00225 (OPV09_00225) - 53181..53663 (-) 483 WP_338680105.1 DUF1203 domain-containing protein -
  OPV09_RS00230 (OPV09_00230) ssb 53855..54370 (-) 516 WP_034754418.1 single-stranded DNA-binding protein Machinery gene
  OPV09_RS00235 (OPV09_00235) uvrA 54752..57601 (+) 2850 WP_034754422.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18192.35 Da        Isoelectric Point: 5.9416

>NTDB_id=926017 OPV09_RS00230 WP_034754418.1 53855..54370(-) (ssb) [Janthinobacterium sp. TB1-E2]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGGGYDAPAPRQAPAPRPAPAPAPRPAPKPAP
NFSDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=926017 OPV09_RS00230 WP_034754418.1 53855..54370(-) (ssb) [Janthinobacterium sp. TB1-E2]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGTCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGCTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGCCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGTGGTGGCGGTGGCGGCGGCTACG
ACGCCCCGGCCCCGCGCCAGGCGCCAGCCCCGCGTCCAGCTCCGGCACCGGCGCCACGCCCGGCACCGAAGCCAGCGCCG
AACTTCTCGGATATGGATGACGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SUJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

51.111

100

0.538
  ssb Neisseria meningitidis MC58

50.556

100

0.532
  ssb Glaesserella parasuis strain SC1401

49.724

100

0.526
  ssb Vibrio cholerae strain A1552

50.279

100

0.526