Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VUQ08_RS09375 Genome accession   NZ_CP142433
Coordinates   1068602..1068697 (-) Length   31 a.a.
NCBI ID   WP_181452005.1    Uniprot ID   -
Organism   Dolosigranulum savutiense strain MSK433     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063602..1073697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ08_RS04905 (VUQ08_04910) - 1066136..1067281 (-) 1146 WP_077863083.1 exonuclease SbcCD subunit D -
  VUQ08_RS04910 (VUQ08_04915) - 1067354..1068472 (-) 1119 WP_077863082.1 hypothetical protein -
  VUQ08_RS09375 comA 1068602..1068697 (-) 96 WP_181452005.1 cysteine peptidase family C39 domain-containing protein Regulator
  VUQ08_RS04915 (VUQ08_04920) - 1068797..1069024 (-) 228 WP_347299809.1 hypothetical protein -
  VUQ08_RS09380 - 1069348..1069602 (-) 255 WP_371825535.1 IS3 family transposase -
  VUQ08_RS04925 (VUQ08_04930) - 1069677..1070432 (-) 756 WP_004635227.1 ATP-binding cassette domain-containing protein -
  VUQ08_RS04930 (VUQ08_04935) - 1070429..1071400 (-) 972 WP_347299810.1 ABC transporter ATP-binding protein -
  VUQ08_RS04935 (VUQ08_04940) - 1071403..1072233 (-) 831 WP_111949638.1 ABC transporter permease -
  VUQ08_RS04940 (VUQ08_04945) - 1072237..1073193 (-) 957 WP_208968192.1 ABC transporter permease -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3753.42 Da        Isoelectric Point: 10.1043

>NTDB_id=925922 VUQ08_RS09375 WP_181452005.1 1068602..1068697(-) (comA) [Dolosigranulum savutiense strain MSK433]
MIFRKYKYRSQINEKDCGVAALGMILDNYRR

Nucleotide


Download         Length: 96 bp        

>NTDB_id=925922 VUQ08_RS09375 WP_181452005.1 1068602..1068697(-) (comA) [Dolosigranulum savutiense strain MSK433]
GTGATTTTTAGAAAGTATAAATATAGATCTCAAATTAATGAAAAAGATTGCGGAGTTGCGGCTCTAGGTATGATTTTAGA
TAATTACAGAAGGTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(5-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

58.621

93.548

0.548
  comA Streptococcus pneumoniae Rx1

48.276

93.548

0.452
  comA Streptococcus pneumoniae D39

48.276

93.548

0.452
  comA Streptococcus pneumoniae R6

48.276

93.548

0.452
  comA Streptococcus mitis NCTC 12261

48.276

93.548

0.452
  comA Streptococcus pneumoniae TIGR4

48.276

93.548

0.452
  comA Streptococcus mitis SK321

48.276

93.548

0.452