Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8663_RS05280 Genome accession   NZ_AP028331
Coordinates   1015299..1015850 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain BCH-10091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1010299..1020850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8663_RS05245 (B10091_10310) - 1010490..1010915 (+) 426 WP_032585143.1 GNAT family N-acetyltransferase -
  R8663_RS05250 (B10091_10320) - 1010979..1011598 (+) 620 Protein_1012 NAD(P)H-dependent oxidoreductase -
  R8663_RS05255 (B10091_10330) - 1011598..1012203 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  R8663_RS05260 (B10091_10340) pgsA 1012328..1012864 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8663_RS05265 (B10091_10350) rseP 1012861..1013967 (+) 1107 WP_002934663.1 RIP metalloprotease RseP -
  R8663_RS05270 (B10091_10360) - 1013960..1014826 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  R8663_RS05275 (B10091_10370) rpsF 1014913..1015290 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8663_RS05280 (B10091_10380) ssb 1015299..1015850 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  R8663_RS05285 (B10091_10390) rpsR 1015861..1016121 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8663_RS05290 (B10091_10400) lon 1016182..1018557 (-) 2376 WP_002885146.1 endopeptidase La -
  R8663_RS05295 (B10091_10410) - 1018574..1019221 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  R8663_RS05300 (B10091_10420) fliW 1019382..1019771 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8663_RS05305 (B10091_10430) proC 1019771..1020502 (+) 732 WP_317675904.1 pyrroline-5-carboxylate reductase Machinery gene
  R8663_RS05310 (B10091_10440) ctsT 1020499..1020801 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=92576 R8663_RS05280 WP_002865738.1 1015299..1015850(+) (ssb) [Campylobacter jejuni strain BCH-10091]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=92576 R8663_RS05280 WP_002865738.1 1015299..1015850(+) (ssb) [Campylobacter jejuni strain BCH-10091]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment