Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   U5897_RS12775 Genome accession   NZ_CP142393
Coordinates   2631877..2632695 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2626877..2637695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS12745 (U5897_12745) - 2627336..2627701 (-) 366 WP_000952249.1 YkgJ family cysteine cluster protein -
  U5897_RS12750 (U5897_12750) - 2627792..2628589 (-) 798 WP_000505326.1 MBL fold metallo-hydrolase -
  U5897_RS12755 (U5897_12755) - 2628817..2629518 (+) 702 Protein_2490 TonB-dependent siderophore receptor -
  U5897_RS12760 (U5897_12760) fimU 2629851..2630324 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U5897_RS12765 (U5897_12765) pilV 2630318..2630878 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U5897_RS12770 (U5897_12770) pilW 2630879..2631880 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  U5897_RS12775 (U5897_12775) pilX 2631877..2632695 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U5897_RS12780 (U5897_12780) pilY1 2632707..2636561 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  U5897_RS12785 (U5897_12785) pilY2 2636574..2637056 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  U5897_RS12790 (U5897_12790) pilE 2637053..2637478 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=925718 U5897_RS12775 WP_000149374.1 2631877..2632695(+) (pilX) [Acinetobacter baumannii strain 38]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=925718 U5897_RS12775 WP_000149374.1 2631877..2632695(+) (pilX) [Acinetobacter baumannii strain 38]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993