Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   U5897_RS12760 Genome accession   NZ_CP142393
Coordinates   2629851..2630324 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624851..2635324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS12740 (U5897_12740) guaB 2625734..2627200 (-) 1467 WP_000956023.1 IMP dehydrogenase -
  U5897_RS12745 (U5897_12745) - 2627336..2627701 (-) 366 WP_000952249.1 YkgJ family cysteine cluster protein -
  U5897_RS12750 (U5897_12750) - 2627792..2628589 (-) 798 WP_000505326.1 MBL fold metallo-hydrolase -
  U5897_RS12755 (U5897_12755) - 2628817..2629518 (+) 702 Protein_2490 TonB-dependent siderophore receptor -
  U5897_RS12760 (U5897_12760) fimU 2629851..2630324 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U5897_RS12765 (U5897_12765) pilV 2630318..2630878 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U5897_RS12770 (U5897_12770) pilW 2630879..2631880 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  U5897_RS12775 (U5897_12775) pilX 2631877..2632695 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=925715 U5897_RS12760 WP_001214065.1 2629851..2630324(+) (fimU) [Acinetobacter baumannii strain 38]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=925715 U5897_RS12760 WP_001214065.1 2629851..2630324(+) (fimU) [Acinetobacter baumannii strain 38]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1