Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   U5897_RS12765 Genome accession   NZ_CP142393
Coordinates   2630318..2630878 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2625318..2635878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS12740 (U5897_12740) guaB 2625734..2627200 (-) 1467 WP_000956023.1 IMP dehydrogenase -
  U5897_RS12745 (U5897_12745) - 2627336..2627701 (-) 366 WP_000952249.1 YkgJ family cysteine cluster protein -
  U5897_RS12750 (U5897_12750) - 2627792..2628589 (-) 798 WP_000505326.1 MBL fold metallo-hydrolase -
  U5897_RS12755 (U5897_12755) - 2628817..2629518 (+) 702 Protein_2490 TonB-dependent siderophore receptor -
  U5897_RS12760 (U5897_12760) fimU 2629851..2630324 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U5897_RS12765 (U5897_12765) pilV 2630318..2630878 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U5897_RS12770 (U5897_12770) pilW 2630879..2631880 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  U5897_RS12775 (U5897_12775) pilX 2631877..2632695 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=925716 U5897_RS12765 WP_002194578.1 2630318..2630878(+) (pilV) [Acinetobacter baumannii strain 38]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=925716 U5897_RS12765 WP_002194578.1 2630318..2630878(+) (pilV) [Acinetobacter baumannii strain 38]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414