Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB2U05_RS22520 Genome accession   NZ_CP163445
Coordinates   5215262..5216995 (-) Length   577 a.a.
NCBI ID   WP_369184062.1    Uniprot ID   -
Organism   Streptomyces sp. Y1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5210262..5221995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2U05_RS22505 (AB2U05_22505) - 5211026..5212102 (-) 1077 WP_369184059.1 NAD(P)/FAD-dependent oxidoreductase -
  AB2U05_RS22510 (AB2U05_22510) sigJ 5212233..5213138 (-) 906 WP_369184060.1 RNA polymerase sigma factor SigJ -
  AB2U05_RS22515 (AB2U05_22515) rcrQ 5213238..5215265 (-) 2028 WP_369184061.1 ABC transporter ATP-binding protein Regulator
  AB2U05_RS22520 (AB2U05_22520) rcrP 5215262..5216995 (-) 1734 WP_369184062.1 ABC transporter ATP-binding protein Regulator
  AB2U05_RS22525 (AB2U05_22525) - 5217376..5219298 (+) 1923 WP_078859707.1 long-chain fatty acid--CoA ligase -
  AB2U05_RS22530 (AB2U05_22530) hemW 5219366..5220595 (+) 1230 WP_369184063.1 radical SAM family heme chaperone HemW -
  AB2U05_RS22535 (AB2U05_22535) - 5220624..5221451 (-) 828 WP_045693609.1 DUF3097 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62471.68 Da        Isoelectric Point: 6.4058

>NTDB_id=925720 AB2U05_RS22520 WP_369184062.1 5215262..5216995(-) (rcrP) [Streptomyces sp. Y1]
MLLRLLRAYLRPYSRPIALLVVLQLVSTLAALYLPTLNADIIDSGVVKGDTGYIMRVGAVMIGVTLVQALCSIGAVHYGA
HAAMAFGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMSFTLMVAAPIMCVGGIIMALNQDVPLSGL
LLAVIPVLGTVVILLVRSLRPKFRSMQVKIDTVNRVLREQITGIRVIRAFVKDEHEQTRFDDANRDLTHTALQVGRLMSF
MFPAVMFVVNASSVAVLWFGAQRIDSGGMEIGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PATPVTETPRRGNLELRDVDFRYPGAEAPVLRGIALTARPGETTAVIGSTGSGKSTLLGLVPRLFDATTGQVLLDGVDVR
DLAPEAIADTVGLVPQKPYLFTGTIASNLRYGRPDATDEELWHALDVAQAKDFVEKMPEGLDAPIAQGGSNVSGGQRQRL
AIARALVRKPGVYLFDDSFSALDYATDAKLRKALARETSDATVLIVAQRVSTIRDADRIIVLDEGAVVGTGTHHELMADN
PTYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925720 AB2U05_RS22520 WP_369184062.1 5215262..5216995(-) (rcrP) [Streptomyces sp. Y1]
GTGCTGCTCAGACTGCTCAGGGCGTACCTGCGCCCCTACTCCCGACCGATCGCCCTGCTGGTCGTCCTCCAGCTGGTGTC
CACCCTCGCGGCGCTCTACCTGCCGACCCTGAACGCCGACATCATCGACAGCGGCGTCGTCAAGGGCGACACCGGCTACA
TCATGCGCGTCGGCGCCGTGATGATCGGCGTCACCCTGGTCCAGGCCCTGTGCTCGATCGGCGCCGTCCACTACGGCGCC
CACGCCGCGATGGCCTTCGGCCGGGACGTCCGCGCCGCCGTCTTCGACCGCGTGCAGAGCTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCCCTGATCACCCGCACCACCAACGACGTCCAACAGGTCCAGATGCTCGCCCTGATGAGCTTCA
CGCTCATGGTCGCCGCACCCATCATGTGCGTCGGCGGCATCATCATGGCGCTCAACCAGGACGTCCCCCTGTCCGGCCTG
CTGCTCGCCGTCATCCCCGTCCTCGGCACCGTGGTCATCCTGCTGGTCCGCTCGCTGCGCCCCAAGTTCCGCAGCATGCA
GGTGAAGATCGACACCGTGAACCGGGTGCTGCGCGAACAGATCACCGGCATCCGGGTCATCCGCGCCTTCGTCAAGGACG
AGCACGAGCAGACCCGCTTCGACGACGCCAACCGCGACCTCACCCACACGGCCCTCCAGGTCGGCCGGCTGATGTCCTTC
ATGTTCCCGGCCGTCATGTTCGTCGTGAACGCCTCCAGCGTCGCCGTCCTCTGGTTCGGCGCCCAGCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTCACCGCGTTCCTCTCCTACCTCATGCAGATCCTGATGAGCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCCGAGGTCTGCGCCGAACGCATCCAGGAAGTCCTCGACACCTCCTCCAGCGTCGTCCCG
CCCGCCACGCCCGTCACCGAGACGCCCCGCCGCGGCAACCTCGAACTGCGCGACGTCGACTTCCGCTACCCCGGCGCCGA
AGCCCCCGTCCTGCGCGGCATCGCCCTCACCGCCCGGCCCGGCGAGACCACCGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTCGTCCCCCGGCTCTTCGACGCCACCACCGGCCAGGTCCTGCTCGACGGCGTCGACGTCCGC
GACCTCGCCCCCGAGGCCATCGCCGACACCGTCGGCCTCGTCCCGCAGAAGCCCTACCTGTTCACCGGCACCATCGCCAG
CAACCTGCGCTACGGCCGGCCCGACGCCACCGACGAGGAACTCTGGCACGCCCTCGACGTCGCCCAGGCCAAGGACTTCG
TCGAGAAGATGCCCGAAGGCCTCGACGCCCCCATCGCCCAGGGCGGCAGCAACGTCTCCGGCGGCCAGCGCCAGCGCCTC
GCCATCGCCCGCGCCCTCGTCCGCAAACCCGGCGTCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCAAACTCCGCAAGGCCCTCGCCCGCGAGACCTCCGACGCCACCGTGCTCATCGTCGCCCAGCGCGTCTCCACCATCC
GCGACGCCGACCGCATCATCGTCCTCGACGAAGGCGCCGTCGTCGGCACCGGCACCCACCACGAACTCATGGCCGACAAC
CCGACGTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.273

95.321

0.393