Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   U5897_RS06275 Genome accession   NZ_CP142393
Coordinates   1294607..1295347 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289607..1300347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS06255 (U5897_06255) aroB 1290149..1291231 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  U5897_RS06260 (U5897_06260) aroK 1291260..1291829 (-) 570 WP_000643712.1 shikimate kinase AroK -
  U5897_RS06265 (U5897_06265) pilQ 1291841..1294006 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  U5897_RS06270 (U5897_06270) pilP 1294069..1294596 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  U5897_RS06275 (U5897_06275) pilO 1294607..1295347 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  U5897_RS06280 (U5897_06280) pilN 1295344..1295985 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  U5897_RS06285 (U5897_06285) pilM 1295985..1297043 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  U5897_RS06290 (U5897_06290) ponA 1297205..1299760 (+) 2556 WP_141214586.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=925691 U5897_RS06275 WP_000076101.1 1294607..1295347(-) (pilO) [Acinetobacter baumannii strain 38]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=925691 U5897_RS06275 WP_000076101.1 1294607..1295347(-) (pilO) [Acinetobacter baumannii strain 38]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683