Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   U5897_RS06280 Genome accession   NZ_CP142393
Coordinates   1295344..1295985 (-) Length   213 a.a.
NCBI ID   WP_000201221.1    Uniprot ID   A0A5P1AXR1
Organism   Acinetobacter baumannii strain 38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290344..1300985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS06260 (U5897_06260) aroK 1291260..1291829 (-) 570 WP_000643712.1 shikimate kinase AroK -
  U5897_RS06265 (U5897_06265) pilQ 1291841..1294006 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  U5897_RS06270 (U5897_06270) pilP 1294069..1294596 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  U5897_RS06275 (U5897_06275) pilO 1294607..1295347 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  U5897_RS06280 (U5897_06280) pilN 1295344..1295985 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  U5897_RS06285 (U5897_06285) pilM 1295985..1297043 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  U5897_RS06290 (U5897_06290) ponA 1297205..1299760 (+) 2556 WP_141214586.1 penicillin-binding protein PBP1a -
  U5897_RS06295 (U5897_06295) - 1299778..1300602 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  U5897_RS06300 (U5897_06300) - 1300605..1300937 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24023.34 Da        Isoelectric Point: 5.3968

>NTDB_id=925692 U5897_RS06280 WP_000201221.1 1295344..1295985(-) (pilN) [Acinetobacter baumannii strain 38]
MATINLLPWREELREQRKKQFITFCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=925692 U5897_RS06280 WP_000201221.1 1295344..1295985(-) (pilN) [Acinetobacter baumannii strain 38]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTTTGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1AXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

73.077

97.653

0.714