Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VQZ30_RS00235 Genome accession   NZ_CP142375
Coordinates   51103..51468 (-) Length   121 a.a.
NCBI ID   WP_045362189.1    Uniprot ID   A0A0A1W133
Organism   Microcystis aeruginosa 1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46103..56468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQZ30_RS00220 (VQZ30_00220) - 46748..47941 (-) 1194 WP_045362181.1 glycosyltransferase -
  VQZ30_RS00225 (VQZ30_00225) - 48002..50407 (-) 2406 WP_045362185.1 methyl-accepting chemotaxis protein -
  VQZ30_RS00230 (VQZ30_00230) - 50510..51010 (-) 501 WP_045362187.1 chemotaxis protein CheW -
  VQZ30_RS00235 (VQZ30_00235) pilH 51103..51468 (-) 366 WP_045362189.1 response regulator Machinery gene
  VQZ30_RS00240 (VQZ30_00240) - 51815..52309 (-) 495 WP_072024917.1 response regulator -
  VQZ30_RS00245 (VQZ30_00245) - 52431..53012 (-) 582 WP_190381688.1 DUF4388 domain-containing protein -
  VQZ30_RS00250 (VQZ30_00250) hmpF 53738..55357 (+) 1620 WP_045362192.1 pilus motility taxis protein HmpF -
  VQZ30_RS00255 (VQZ30_00255) - 55718..55846 (+) 129 WP_274518365.1 hypothetical protein -
  VQZ30_RS00260 (VQZ30_00260) - 55973..56197 (+) 225 WP_045362195.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13835.16 Da        Isoelectric Point: 6.9282

>NTDB_id=925526 VQZ30_RS00235 WP_045362189.1 51103..51468(-) (pilH) [Microcystis aeruginosa 1339]
MSEILLVEDSQTQREWICDLLRKSGIKVTSAKDGVEALEHIQRVNPDLVVLDIVMPQMNGYEVCRRLKSDPKTQNVPVVI
CSSKGEVFDRYWGMKIGADAYIVKPFEPIEFIGTIKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=925526 VQZ30_RS00235 WP_045362189.1 51103..51468(-) (pilH) [Microcystis aeruginosa 1339]
ATGAGTGAAATATTGCTGGTAGAAGACAGCCAAACGCAACGGGAATGGATCTGTGATCTACTCCGCAAGAGCGGCATTAA
GGTCACGAGCGCCAAAGATGGGGTAGAAGCACTCGAACATATTCAGAGGGTTAATCCCGATTTAGTCGTCCTCGATATCG
TCATGCCCCAGATGAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCAAAAACCCAAAATGTCCCGGTGGTCATC
TGTTCCTCGAAAGGAGAAGTTTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAGCCCTTTGA
GCCAATTGAGTTCATTGGTACTATTAAACAACTGCTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1W133

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

70.833

99.174

0.702
  vicR Streptococcus mutans UA159

38.017

100

0.38
  micA Streptococcus pneumoniae Cp1015

37.19

100

0.372
  pilG Acinetobacter baumannii strain A118

39.13

95.041

0.372