Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VKP39_RS07040 Genome accession   NZ_CP142353
Coordinates   1413096..1413587 (-) Length   163 a.a.
NCBI ID   WP_136127463.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1408096..1418587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS07025 (VKP39_07025) - 1410826..1411770 (+) 945 WP_011888617.1 magnesium transporter CorA family protein -
  VKP39_RS07030 (VKP39_07030) - 1411903..1412559 (+) 657 WP_010922629.1 DUF1129 domain-containing protein -
  VKP39_RS07035 (VKP39_07035) rpsR 1412692..1412931 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  VKP39_RS07040 (VKP39_07040) ssbA 1413096..1413587 (-) 492 WP_136127463.1 single-stranded DNA-binding protein Machinery gene
  VKP39_RS07045 (VKP39_07045) rpsF 1413609..1413899 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  VKP39_RS07050 (VKP39_07050) - 1414072..1414365 (-) 294 WP_002983113.1 hypothetical protein -
  VKP39_RS07055 (VKP39_07055) mutY 1414533..1415687 (+) 1155 WP_002988276.1 A/G-specific adenine glycosylase -
  VKP39_RS07060 (VKP39_07060) - 1415763..1416356 (+) 594 WP_109828813.1 helix-turn-helix domain-containing protein -
  VKP39_RS07065 (VKP39_07065) trxA 1416408..1416740 (-) 333 WP_001932060.1 thioredoxin -
  VKP39_RS07070 (VKP39_07070) - 1416803..1417303 (-) 501 WP_002993246.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18023.84 Da        Isoelectric Point: 4.8894

>NTDB_id=925180 VKP39_RS07040 WP_136127463.1 1413096..1413587(-) (ssbA) [Streptococcus pyogenes strain D641]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIVVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=925180 VKP39_RS07040 WP_136127463.1 1413096..1413587(-) (ssbA) [Streptococcus pyogenes strain D641]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGTAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362