Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VKP38_RS02045 Genome accession   NZ_CP142352
Coordinates   373639..374130 (+) Length   163 a.a.
NCBI ID   WP_023605268.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 2907-97     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 368639..379130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP38_RS02015 (VKP38_02015) - 369923..370423 (+) 501 WP_002993246.1 phosphatase PAP2 family protein -
  VKP38_RS02020 (VKP38_02020) trxA 370486..370818 (+) 333 WP_001932060.1 thioredoxin -
  VKP38_RS02025 (VKP38_02025) - 370870..371463 (-) 594 WP_023079969.1 helix-turn-helix domain-containing protein -
  VKP38_RS02030 (VKP38_02030) mutY 371539..372693 (-) 1155 WP_002988276.1 A/G-specific adenine glycosylase -
  VKP38_RS02035 (VKP38_02035) - 372861..373154 (+) 294 WP_002983113.1 hypothetical protein -
  VKP38_RS02040 (VKP38_02040) rpsF 373327..373617 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  VKP38_RS02045 (VKP38_02045) ssb 373639..374130 (+) 492 WP_023605268.1 single-stranded DNA-binding protein Machinery gene
  VKP38_RS02050 (VKP38_02050) rpsR 374295..374534 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  VKP38_RS02055 (VKP38_02055) - 374667..375323 (-) 657 WP_002983144.1 DUF1129 domain-containing protein -
  VKP38_RS02060 (VKP38_02060) - 375455..376399 (-) 945 WP_011888617.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17993.81 Da        Isoelectric Point: 4.8894

>NTDB_id=925095 VKP38_RS02045 WP_023605268.1 373639..374130(+) (ssb) [Streptococcus pyogenes strain 2907-97]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNISSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=925095 VKP38_RS02045 WP_023605268.1 373639..374130(+) (ssb) [Streptococcus pyogenes strain 2907-97]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACATTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362