Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MFE95_RS06260 | Genome accession | NZ_AP025519 |
| Coordinates | 1254647..1255111 (+) | Length | 154 a.a. |
| NCBI ID | WP_238300544.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain Pm1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1217634..1260388 | 1254647..1255111 | within | 0 |
Gene organization within MGE regions
Location: 1217634..1260388
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MFE95_RS06030 (PASm1_11730) | - | 1217634..1217957 (-) | 324 | WP_016569978.1 | hypothetical protein | - |
| MFE95_RS06035 (PASm1_11740) | gpJ | 1218005..1223899 (-) | 5895 | WP_238300537.1 | TipJ family phage tail tip protein | - |
| MFE95_RS06040 (PASm1_11750) | - | 1223903..1224523 (-) | 621 | WP_014667799.1 | tail assembly protein | - |
| MFE95_RS06045 (PASm1_11760) | - | 1224466..1225209 (-) | 744 | WP_102827075.1 | C40 family peptidase | - |
| MFE95_RS06050 (PASm1_11770) | - | 1225214..1225927 (-) | 714 | WP_023430089.1 | phage minor tail protein L | - |
| MFE95_RS06055 (PASm1_11780) | - | 1226064..1226414 (-) | 351 | WP_005719622.1 | phage tail protein | - |
| MFE95_RS06060 (PASm1_11790) | - | 1226411..1228564 (-) | 2154 | WP_238300235.1 | phage tail length tape measure family protein | - |
| MFE95_RS13220 (PASm1_11800) | - | 1228551..1228745 (-) | 195 | WP_420488825.1 | hypothetical protein | - |
| MFE95_RS06070 (PASm1_11810) | - | 1228874..1229263 (-) | 390 | WP_061406079.1 | phage minor tail protein G | - |
| MFE95_RS06075 (PASm1_11820) | - | 1229266..1229775 (-) | 510 | WP_115098329.1 | phage tail tube protein | - |
| MFE95_RS06080 (PASm1_11830) | gpU | 1229772..1230179 (-) | 408 | WP_223131948.1 | phage minor tail U family protein | - |
| MFE95_RS06085 (PASm1_11840) | - | 1230176..1230727 (-) | 552 | WP_223131947.1 | phage tail protein | - |
| MFE95_RS06090 (PASm1_11850) | - | 1230727..1231020 (-) | 294 | WP_005719722.1 | hypothetical protein | - |
| MFE95_RS06095 (PASm1_11860) | - | 1231013..1231339 (-) | 327 | WP_016570083.1 | DUF2190 family protein | - |
| MFE95_RS06100 (PASm1_11870) | - | 1231410..1233428 (-) | 2019 | WP_238300233.1 | ClpP-like prohead protease/major capsid protein fusion protein | - |
| MFE95_RS06105 (PASm1_11880) | - | 1233364..1234902 (-) | 1539 | WP_238300232.1 | phage portal protein | - |
| MFE95_RS06110 (PASm1_11890) | - | 1234899..1235120 (-) | 222 | WP_014391481.1 | hypothetical protein | - |
| MFE95_RS06115 (PASm1_11900) | - | 1235117..1237225 (-) | 2109 | WP_238300231.1 | phage terminase large subunit family protein | - |
| MFE95_RS06120 (PASm1_11910) | - | 1237228..1237704 (-) | 477 | WP_075269225.1 | DUF1441 family protein | - |
| MFE95_RS06125 (PASm1_11920) | - | 1237963..1238139 (+) | 177 | WP_016533221.1 | type II toxin-antitoxin system HicA family toxin | - |
| MFE95_RS06130 (PASm1_11930) | - | 1238187..1238603 (+) | 417 | WP_016533220.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| MFE95_RS06135 (PASm1_11940) | lysC | 1238641..1238922 (-) | 282 | WP_420488823.1 | Rz1-like lysis system protein LysC | - |
| MFE95_RS06140 (PASm1_11950) | - | 1238828..1239151 (-) | 324 | WP_016569983.1 | DUF2570 family protein | - |
| MFE95_RS06145 (PASm1_11960) | - | 1239154..1239738 (-) | 585 | WP_016533462.1 | glycoside hydrolase family 19 protein | - |
| MFE95_RS06150 (PASm1_11970) | - | 1239710..1240075 (-) | 366 | WP_016533461.1 | phage holin, lambda family | - |
| MFE95_RS06155 (PASm1_11980) | - | 1240453..1240668 (+) | 216 | WP_015691066.1 | ECs_2282 family putative zinc-binding protein | - |
| MFE95_RS06160 (PASm1_11990) | - | 1240877..1241242 (-) | 366 | WP_016533470.1 | antiterminator Q family protein | - |
| MFE95_RS06165 (PASm1_12000) | - | 1241242..1241844 (-) | 603 | WP_016533469.1 | recombination protein NinG | - |
| MFE95_RS06170 (PASm1_12010) | - | 1241932..1242144 (-) | 213 | WP_016533468.1 | hypothetical protein | - |
| MFE95_RS06175 (PASm1_12020) | - | 1242218..1242676 (-) | 459 | WP_016569985.1 | recombination protein NinB | - |
| MFE95_RS06180 (PASm1_12030) | - | 1242666..1243202 (-) | 537 | WP_014391470.1 | phage N-6-adenine-methyltransferase | - |
| MFE95_RS06185 (PASm1_12040) | - | 1243206..1244645 (-) | 1440 | WP_238300296.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| MFE95_RS06190 (PASm1_12050) | - | 1244645..1245484 (-) | 840 | WP_071523827.1 | DNA replication protein | - |
| MFE95_RS06195 (PASm1_12060) | - | 1245569..1246270 (-) | 702 | WP_064775604.1 | phage antirepressor KilAC domain-containing protein | - |
| MFE95_RS06200 (PASm1_12070) | - | 1246329..1246781 (-) | 453 | WP_238300539.1 | phage regulatory CII family protein | - |
| MFE95_RS06205 (PASm1_12080) | - | 1246830..1247030 (-) | 201 | WP_075266297.1 | transcriptional regulator | - |
| MFE95_RS06210 (PASm1_12090) | - | 1247152..1247838 (+) | 687 | WP_075266295.1 | S24 family peptidase | - |
| MFE95_RS06215 (PASm1_12100) | - | 1248042..1249886 (+) | 1845 | WP_071523830.1 | DEAD/DEAH box helicase | - |
| MFE95_RS06220 (PASm1_12110) | - | 1249916..1250320 (+) | 405 | WP_238300541.1 | hypothetical protein | - |
| MFE95_RS06225 (PASm1_12120) | - | 1250877..1251107 (+) | 231 | WP_016533507.1 | hypothetical protein | - |
| MFE95_RS06230 (PASm1_12130) | - | 1251477..1252154 (+) | 678 | WP_075266291.1 | BRO family protein | - |
| MFE95_RS06235 (PASm1_12140) | - | 1252239..1252538 (+) | 300 | WP_014390709.1 | hypothetical protein | - |
| MFE95_RS06240 (PASm1_12150) | - | 1252510..1252746 (+) | 237 | WP_075266289.1 | hypothetical protein | - |
| MFE95_RS06245 (PASm1_12160) | - | 1252759..1253046 (+) | 288 | WP_064964850.1 | hypothetical protein | - |
| MFE95_RS06250 (PASm1_12170) | - | 1253048..1254001 (+) | 954 | WP_014391451.1 | recombinase RecT | - |
| MFE95_RS06255 (PASm1_12180) | - | 1253988..1254647 (+) | 660 | WP_041423209.1 | translocation protein TolB precursor | - |
| MFE95_RS06260 (PASm1_12190) | ssb | 1254647..1255111 (+) | 465 | WP_238300544.1 | single-stranded DNA-binding protein | Machinery gene |
| MFE95_RS06265 (PASm1_12200) | - | 1255123..1255314 (+) | 192 | WP_016533530.1 | hypothetical protein | - |
| MFE95_RS06270 (PASm1_12210) | - | 1255357..1255710 (+) | 354 | WP_016570064.1 | hypothetical protein | - |
| MFE95_RS06275 (PASm1_12220) | - | 1255782..1256570 (+) | 789 | WP_014391448.1 | DUF2303 family protein | - |
| MFE95_RS06280 (PASm1_12230) | - | 1256623..1257222 (+) | 600 | WP_016569996.1 | hypothetical protein | - |
| MFE95_RS06285 (PASm1_12240) | - | 1257219..1257509 (+) | 291 | WP_016569997.1 | hypothetical protein | - |
| MFE95_RS06290 (PASm1_12250) | - | 1257543..1258025 (+) | 483 | WP_238300554.1 | class I SAM-dependent methyltransferase | - |
| MFE95_RS06295 (PASm1_12260) | - | 1258028..1258462 (+) | 435 | WP_238300287.1 | DUF551 domain-containing protein | - |
| MFE95_RS06300 (PASm1_12270) | - | 1258474..1258959 (+) | 486 | WP_238300412.1 | DUF551 domain-containing protein | - |
| MFE95_RS06305 (PASm1_12280) | - | 1259121..1259402 (+) | 282 | WP_047918098.1 | hypothetical protein | - |
| MFE95_RS06310 (PASm1_12290) | - | 1259399..1260388 (-) | 990 | WP_139617332.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17177.96 Da Isoelectric Point: 5.9165
>NTDB_id=92473 MFE95_RS06260 WP_238300544.1 1254647..1255111(+) (ssb) [Pasteurella multocida strain Pm1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
Nucleotide
Download Length: 465 bp
>NTDB_id=92473 MFE95_RS06260 WP_238300544.1 1254647..1255111(+) (ssb) [Pasteurella multocida strain Pm1]
ATGGCTGGAGTCAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA
ATGGCTGGAGTCAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
62.431 |
100 |
0.734 |
| ssb | Vibrio cholerae strain A1552 |
49.425 |
100 |
0.558 |
| ssb | Neisseria meningitidis MC58 |
44.509 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
44.509 |
100 |
0.5 |