Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DPPLL_RS07495 Genome accession   NZ_AP025516
Coordinates   1609355..1609774 (+) Length   139 a.a.
NCBI ID   WP_284154179.1    Uniprot ID   -
Organism   Desulfofustis limnaeus strain PPLL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1604355..1614774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPPLL_RS07480 (DPPLL_15000) - 1605343..1606869 (-) 1527 WP_284154176.1 Rne/Rng family ribonuclease -
  DPPLL_RS07485 (DPPLL_15020) - 1607253..1608101 (+) 849 WP_284154177.1 glycosyltransferase family A protein -
  DPPLL_RS07490 (DPPLL_15030) - 1608112..1609233 (+) 1122 WP_284154178.1 radical SAM protein -
  DPPLL_RS07495 (DPPLL_15040) ssb 1609355..1609774 (+) 420 WP_284154179.1 single-stranded DNA-binding protein Machinery gene
  DPPLL_RS07500 (DPPLL_15050) - 1609984..1610901 (+) 918 WP_284154180.1 J domain-containing protein -
  DPPLL_RS07505 (DPPLL_15060) - 1610990..1611535 (-) 546 WP_284154181.1 3-isopropylmalate dehydratase small subunit -
  DPPLL_RS07510 (DPPLL_15070) - 1611547..1612833 (-) 1287 WP_284154182.1 3-isopropylmalate dehydratase large subunit -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15693.43 Da        Isoelectric Point: 5.2663

>NTDB_id=92436 DPPLL_RS07495 WP_284154179.1 1609355..1609774(+) (ssb) [Desulfofustis limnaeus strain PPLL]
MINKAIIVGNLGADPEIRYTQGGAPVATFNVATTERWKDQSGAQQESTEWHRIVAWRKLAEICGEYLHKGSKVYIEGKIQ
TRKWQDQNGNDRWTTEIVAREMKMLDRRDSGSDTYGGSQEQNYPEPPPGYGGMGEDVPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=92436 DPPLL_RS07495 WP_284154179.1 1609355..1609774(+) (ssb) [Desulfofustis limnaeus strain PPLL]
ATGATCAACAAGGCCATCATCGTCGGCAATCTCGGTGCCGACCCGGAAATACGCTATACCCAGGGCGGGGCGCCAGTGGC
AACCTTCAACGTGGCCACCACCGAACGGTGGAAGGATCAGAGTGGTGCCCAGCAGGAATCCACCGAGTGGCACCGCATTG
TCGCCTGGCGCAAGCTGGCGGAGATCTGCGGCGAGTATCTGCATAAGGGGTCCAAGGTCTATATTGAAGGAAAAATTCAG
ACGAGAAAGTGGCAGGATCAGAACGGCAATGACCGGTGGACGACGGAAATCGTCGCCCGGGAAATGAAGATGCTCGACCG
ACGCGATTCCGGCTCCGATACCTATGGCGGCAGCCAGGAACAGAATTATCCTGAACCGCCTCCGGGCTATGGCGGCATGG
GTGAAGACGTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.693

91.367

0.518
  ssb Neisseria gonorrhoeae MS11

51.2

89.928

0.46
  ssb Neisseria meningitidis MC58

51.2

89.928

0.46
  ssb Vibrio cholerae strain A1552

55.357

80.576

0.446

Multiple sequence alignment