Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1N70_RS23010 Genome accession   NZ_CP162603
Coordinates   4753279..4753815 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PEC1020     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4748279..4758815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N70_RS22990 soxR 4750007..4750471 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  AB1N70_RS22995 soxS 4750557..4750880 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AB1N70_RS23000 pdeC 4750883..4752469 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  AB1N70_RS23005 yjcB 4752899..4753180 (+) 282 WP_001295689.1 YjcB family protein -
  AB1N70_RS23010 ssb 4753279..4753815 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB1N70_RS23015 uvrA 4754070..4756892 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  AB1N70_RS23020 yjbR 4756927..4757283 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AB1N70_RS23025 yjbQ 4757287..4757703 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB1N70_RS23030 aphA 4757814..4758527 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=924006 AB1N70_RS23010 WP_000168305.1 4753279..4753815(-) (ssb) [Escherichia coli strain PEC1020]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=924006 AB1N70_RS23010 WP_000168305.1 4753279..4753815(-) (ssb) [Escherichia coli strain PEC1020]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489