Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV44_RS12835 Genome accession   NZ_AP025510
Coordinates   2885787..2886434 (+) Length   215 a.a.
NCBI ID   WP_139685670.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2880787..2891434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS12820 - 2881326..2882768 (-) 1443 WP_139685672.1 MSHA biogenesis protein MshI -
  OCV44_RS12825 csrD 2882771..2884786 (-) 2016 WP_139685671.1 RNase E specificity factor CsrD -
  OCV44_RS12830 ssb 2884948..2885508 (-) 561 WP_050651991.1 single-stranded DNA-binding protein Machinery gene
  OCV44_RS12835 qstR 2885787..2886434 (+) 648 WP_139685670.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV44_RS12840 galU 2886589..2887461 (+) 873 WP_086050159.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV44_RS12845 uvrA 2887612..2890443 (+) 2832 WP_139685669.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25082.26 Da        Isoelectric Point: 9.6260

>NTDB_id=92379 OCV44_RS12835 WP_139685670.1 2885787..2886434(+) (qstR) [Vibrio tasmaniensis strain LMG 20012]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPGELMLVDRKQSNRILLVDYKEVKQLLAICPNLTVMWKNHE
IILFNVPLQLPTSELLTYGVLKGLFYNTDQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92379 OCV44_RS12835 WP_139685670.1 2885787..2886434(+) (qstR) [Vibrio tasmaniensis strain LMG 20012]
ATGAGAAAATCTCGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCGAACGACACCTACCTACATGTTAAAGAGAT
AGAAAAACACTTATCCATAATTCTCTATAAAATGACACCAGGTGAATTGATGCTAGTTGATAGGAAGCAGAGCAATCGTA
TCCTGCTTGTTGATTACAAAGAGGTAAAACAGCTACTGGCTATTTGTCCTAACCTAACCGTAATGTGGAAGAATCATGAG
ATCATCTTATTCAATGTTCCTCTACAACTTCCTACCTCTGAGCTGCTGACCTACGGGGTGTTAAAAGGACTCTTTTACAA
CACAGATCAAAAAGATAAAATTGCTCGTGGTCTTCAAGAAGTCATCGATGGTGATAATTGGCTACCTAGGAAGGTGACTA
ATCAACTTCTGTTTTATTATCGTAATATGGTCAATACCAACACAACCCCAACCAATGTCGATTTAACTATTCGTGAGATC
CAAGTTATTCGCTGTCTTCAATCGGGATCGTCAAATACCCAAATAGCCGATGATCTTTTTATTAGTGAATTTACGGTCAA
GTCTCATCTCTATCAAATATTTCGTAAATTAGCGGTAAAGAATAGAGTTCAAGCTATTGCATGGGCAAACCAAAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.488

100

0.535
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.131

99.535

0.479

Multiple sequence alignment