Detailed information NTG0092378

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: OCV44_RS12830
• Genome accession: NZ_AP025510
• Coordinates: 2884948..2885508 (-)
• Length: 186 a.a.
• NCBI ID: WP_050651991.1
• Uniprot ID: A0AA87C3J1
• Organism: Vibrio tasmaniensis strain LMG 20012
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2869561..2884786	2884948..2885508	flank	162

Gene organization within MGE regions

Location: 2869561..2885508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV44_RS12750	-	2869561..2869989 (-)	429	WP_139685683.1	MSHA biogenesis protein MshP	-
OCV44_RS12755	-	2869979..2870701 (-)	723	WP_139685682.1	PilW family protein	-
OCV44_RS12760	-	2870701..2871264 (-)	564	WP_211349771.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OCV44_RS12765	-	2871255..2871812 (-)	558	WP_170213745.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OCV44_RS12770	-	2871947..2872468 (-)	522	WP_139685680.1	type II secretion system protein	-
OCV44_RS12775	-	2872503..2873078 (-)	576	WP_009847857.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OCV44_RS12780	-	2873158..2873613 (-)	456	WP_139685679.1	MSHA biogenesis protein MshF	-
OCV44_RS12785	-	2873617..2874840 (-)	1224	WP_139685678.1	type II secretion system F family protein	-
OCV44_RS12790	-	2874853..2876577 (-)	1725	WP_139685677.1	GspE/PulE family protein	-
OCV44_RS12795	-	2876567..2877763 (-)	1197	WP_139685676.1	lipopolysaccharide assembly protein LapB	-
OCV44_RS12800	-	2877766..2878605 (-)	840	WP_139685675.1	ExeA family protein	-
OCV44_RS12805	mshL	2878662..2880338 (-)	1677	WP_139685674.1	pilus (MSHA type) biogenesis protein MshL	-
OCV44_RS12810	-	2880354..2880686 (-)	333	WP_009847864.1	hypothetical protein	-
OCV44_RS12815	pilO	2880679..2881326 (-)	648	WP_139685673.1	type 4a pilus biogenesis protein PilO	-
OCV44_RS12820	-	2881326..2882768 (-)	1443	WP_139685672.1	MSHA biogenesis protein MshI	-
OCV44_RS12825	csrD	2882771..2884786 (-)	2016	WP_139685671.1	RNase E specificity factor CsrD	-
OCV44_RS12830	ssb	2884948..2885508 (-)	561	WP_050651991.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 186 a.a.
• Molecular weight: 20528.65 Da
• Isoelectric Point: 5.2358

>NTDB_id=92378 OCV44_RS12830 WP_050651991.1 2884948..2885508(-) (ssb) [Vibrio tasmaniensis strain LMG 20012]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQQYSAPAQQQPK
APQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide

• Length: 561 bp

>NTDB_id=92378 OCV44_RS12830 WP_050651991.1 2884948..2885508(-) (ssb) [Vibrio tasmaniensis strain LMG 20012]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGACCGCTACACGACAGAAGTTGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAGCAACAACAATACAGTGCGCCTGCTCAACAGCAGCCAAAA
GCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCGATGGATTTTGATGATGACATCCCATTTTA
A

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-105)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	81.283	100	0.817
ssb	Glaesserella parasuis strain SC1401	54.359	100	0.57
ssb	Neisseria meningitidis MC58	46.774	100	0.468
ssb	Neisseria gonorrhoeae MS11	46.774	100	0.468