Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VRC05_RS23950 Genome accession   NZ_CP142194
Coordinates   5341296..5342792 (+) Length   498 a.a.
NCBI ID   WP_338502338.1    Uniprot ID   -
Organism   Pseudomonas poae strain B11_6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5336296..5347792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRC05_RS23920 (VRC05_23920) - 5336765..5337460 (+) 696 WP_003231574.1 HAD-IA family hydrolase -
  VRC05_RS23925 (VRC05_23925) sutA 5337665..5337997 (-) 333 WP_003231576.1 transcriptional regulator SutA -
  VRC05_RS23930 (VRC05_23930) - 5338100..5338525 (-) 426 WP_015373280.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VRC05_RS23935 (VRC05_23935) - 5338737..5340074 (-) 1338 WP_003231579.1 ammonium transporter -
  VRC05_RS23940 (VRC05_23940) glnK 5340109..5340447 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  VRC05_RS23945 (VRC05_23945) - 5340871..5341131 (+) 261 WP_003231581.1 accessory factor UbiK family protein -
  VRC05_RS23950 (VRC05_23950) comM 5341296..5342792 (+) 1497 WP_338502338.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VRC05_RS23955 (VRC05_23955) - 5342927..5344903 (-) 1977 WP_236277453.1 methyl-accepting chemotaxis protein -
  VRC05_RS23960 (VRC05_23960) - 5345133..5346509 (+) 1377 WP_065869710.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53585.70 Da        Isoelectric Point: 7.7255

>NTDB_id=923015 VRC05_RS23950 WP_338502338.1 5341296..5342792(+) (comM) [Pseudomonas poae strain B11_6]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEECLASGLKVIAVDHL
LQVVAHLNGQVPIEPYKSDGLQYLNKPYPDLSEVQGQLSAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPIQND
GETTTSASARVAQARERQQQRQGCANAFLDLPGLREHCTLAKVDESWLETACERLTLSLRAAHRLLKVARTLADLEQQDA
IARHHLQEALQYRPAALN

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=923015 VRC05_RS23950 WP_338502338.1 5341296..5342792(+) (comM) [Pseudomonas poae strain B11_6]
ATGTCCCTCGCCATTGTCCACAGCCGCGCCCAGGTTGGCGTCGAAGCCCCCGCCGTCACCGTCGAGGTGCATATGGCCAA
TGGTTTGCCGTCCCTGACGCTGGTGGGTTTGCCCGAAACCGCCGTCAAGGAAAGCAAGGACCGTGTACGCAGTGCCATCC
TCAATTCGGCCCTGCAATACCCGTCGCGCCGGATCACCCTCAACCTTGCACCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCAATTGCCTTGGGCATTCTGGCAGCCAGTGTGCAGGTGCCGGCGTTGATGCTCGATGACGTGGAGTGCCT
CGGGGAATTGGCGTTGTCCGGCGAGGTGCGCGCCGTCAAGGGCGTGTTGCCGGCGGCGTTGGCCGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAACGCCGAGGAGGAGTGCCTGGCGTCGGGACTGAAGGTCATAGCGGTGGATCACCTG
CTGCAGGTGGTCGCACACCTGAATGGACAGGTGCCCATTGAGCCCTACAAGTCAGACGGTTTGCAGTACCTGAACAAGCC
GTATCCGGACCTGAGCGAGGTGCAGGGCCAGCTCTCGGCCAAGCGCGCCTTGCTGATCGCAGCGGCGGGCGCGCATAACC
TGCTGCTCAGCGGCCCGCCCGGCACTGGCAAGACCTTGCTCGCCAGTCGCCTGCCGGGCCTGCTACCGCCGCTGAGTGAG
CAGGAAGCGCTGGAAGTCGCGGCGATTCAATCGGTCGTCAGCCTCGCGCCCTTGAGCCACTGGCCCCATCGGCCGTTTCG
CCAGCCGCATCACTCCGCATCCGGCCCGGCACTGGTGGGCGGCGGGTCAAAACCGCAACCGGGGGAAATCACCCTGGCAC
ACCATGGCGTGCTGTTTCTGGATGAATTGCCCGAGTTTGATCGCAAGGTGCTTGAGGTACTGCGCGAACCCCTGGAGTCA
GGCCATATCGTGATTTCCCGCGCCCGCGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTGGCAGCAATGAACCCGTG
TCCCTGCGGGTATATGGGCGAGCCCAGTGGTCGTTGTCGCTGTACGCCGGAACAGATTCAGCGCTATCGCAACAAACTCT
CCGGGCCTCTGCTGGACCGGATCGATCTGCACCTGACCGTGGCACGAGAGACCACAGCGCTCAATCCCATTCAAAACGAT
GGTGAAACAACGACCAGCGCCTCGGCGCGCGTTGCCCAGGCGCGCGAGCGTCAACAGCAACGCCAGGGATGTGCCAATGC
CTTTCTTGACCTGCCGGGTTTGCGCGAGCATTGCACACTGGCAAAGGTCGACGAGAGCTGGCTGGAGACCGCATGCGAGC
GCTTGACGCTGTCGCTGCGTGCGGCGCATCGGCTGCTAAAGGTGGCGCGCACGTTGGCAGACCTGGAGCAACAAGACGCG
ATCGCGCGTCACCACCTGCAAGAGGCACTGCAATACCGCCCGGCGGCACTTAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Glaesserella parasuis strain SC1401

55.289

100

0.556
  comM Vibrio cholerae strain A1552

55.645

99.598

0.554
  comM Haemophilus influenzae Rd KW20

54.4

100

0.546
  comM Legionella pneumophila str. Paris

51.205

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.205

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.472