Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VSF34_RS09885 Genome accession   NZ_CP142146
Coordinates   2006967..2007482 (-) Length   171 a.a.
NCBI ID   WP_326717128.1    Uniprot ID   -
Organism   Vagococcus jeotgali strain B2T-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2001967..2012482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSF34_RS09865 - 2003236..2004528 (-) 1293 WP_326717124.1 adenylosuccinate synthase -
  VSF34_RS09870 dnaB 2004650..2006023 (-) 1374 WP_326717125.1 replicative DNA helicase -
  VSF34_RS09875 rplI 2006043..2006495 (-) 453 WP_326717126.1 50S ribosomal protein L9 -
  VSF34_RS09880 rpsR 2006707..2006946 (-) 240 WP_326717127.1 30S ribosomal protein S18 -
  VSF34_RS09885 ssb 2006967..2007482 (-) 516 WP_326717128.1 single-stranded DNA-binding protein Machinery gene
  VSF34_RS09890 rpsF 2007526..2007825 (-) 300 WP_326717129.1 30S ribosomal protein S6 -
  VSF34_RS09895 gyrA 2008047..2010530 (-) 2484 WP_326717130.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19063.74 Da        Isoelectric Point: 4.6109

>NTDB_id=921995 VSF34_RS09885 WP_326717128.1 2006967..2007482(-) (ssb) [Vagococcus jeotgali strain B2T-5]
MINNVVLVGRLTRDPDLRYTSNGSAVATFTLAVNRNFTNQSGEREADFVNCVIWRKSAETLANYAKKGTLLGVTGRIQTR
NYENQQGQKVYVTEVVCENFQLLESRNASEQRSQQSAGGFNDFSQQGQQTQQQSSFGKSQNQGNSMPNFDRDSDPFGGSE
QIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=921995 VSF34_RS09885 WP_326717128.1 2006967..2007482(-) (ssb) [Vagococcus jeotgali strain B2T-5]
ATGATTAATAATGTTGTATTAGTTGGTAGACTTACTAGAGACCCAGATTTGAGATATACCTCAAATGGTTCAGCCGTGGC
TACATTTACGTTAGCTGTTAATCGTAACTTTACGAATCAAAGTGGAGAACGAGAAGCAGATTTTGTTAATTGTGTTATTT
GGAGAAAATCTGCTGAAACTTTAGCTAATTATGCTAAAAAAGGTACTCTTTTGGGAGTAACTGGAAGAATCCAAACTAGA
AACTATGAGAATCAACAAGGTCAAAAAGTATATGTTACTGAAGTCGTTTGCGAGAATTTCCAATTATTAGAATCAAGAAA
TGCTTCTGAGCAAAGAAGTCAGCAATCTGCTGGTGGATTCAATGATTTTTCTCAACAAGGGCAACAAACACAACAGCAAT
CATCCTTTGGGAAATCTCAAAACCAAGGTAATAGCATGCCGAATTTCGATCGTGATAGTGATCCATTTGGTGGATCTGAA
CAGATAGATATTTCGGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.372

100

0.637
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.757

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

61.988

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.062

75.439

0.363