Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   VP456_RS14750 Genome accession   NZ_CP142142
Coordinates   2921914..2922666 (-) Length   250 a.a.
NCBI ID   WP_029973370.1    Uniprot ID   A0AAP3YC33
Organism   Bacillus velezensis strain PD9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2916914..2927666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS14725 (VP456_14680) mreC 2917350..2918213 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  VP456_RS14730 (VP456_14685) mreB 2918244..2919257 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  VP456_RS14735 (VP456_14690) radC 2919349..2920044 (-) 696 WP_007408165.1 DNA repair protein RadC -
  VP456_RS14740 (VP456_14695) - 2920076..2920645 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  VP456_RS14745 (VP456_14700) - 2920786..2921787 (-) 1002 WP_022552880.1 SPOR domain-containing protein -
  VP456_RS14750 (VP456_14705) comC 2921914..2922666 (-) 753 WP_029973370.1 A24 family peptidase Machinery gene
  VP456_RS14755 (VP456_14710) - 2922806..2924098 (-) 1293 WP_029973369.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  VP456_RS14760 (VP456_14715) - 2924157..2926799 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  VP456_RS14765 (VP456_14720) - 2927252..2927443 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27257.97 Da        Isoelectric Point: 9.4293

>NTDB_id=921941 VP456_RS14750 WP_029973370.1 2921914..2922666(-) (comC) [Bacillus velezensis strain PD9]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTTAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=921941 VP456_RS14750 WP_029973370.1 2921914..2922666(-) (comC) [Bacillus velezensis strain PD9]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGACAGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576