Detailed information NTG0921856

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: VQ574_RS17475
• Genome accession: NZ_CP142122
• Coordinates: 3704579..3705916 (+)
• Length: 445 a.a.
• NCBI ID: WP_152481770.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain XN05-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3699579..3710916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VQ574_RS17450 (VQ574_17450)	pgeF	3699611..3700348 (-)	738	WP_326428905.1	peptidoglycan editing factor PgeF	-
VQ574_RS17455 (VQ574_17455)	rluD	3700345..3701319 (-)	975	WP_063541901.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
VQ574_RS17460 (VQ574_17460)	-	3701523..3702512 (+)	990	WP_063541899.1	outer membrane protein assembly factor BamD	-
VQ574_RS17465 (VQ574_17465)	-	3702633..3702866 (+)	234	WP_110775887.1	PP0621 family protein	-
VQ574_RS17470 (VQ574_17470)	pilS	3702856..3704451 (+)	1596	WP_230724397.1	sensor histidine kinase	Regulator
VQ574_RS17475 (VQ574_17475)	pilR	3704579..3705916 (+)	1338	WP_152481770.1	sigma-54-dependent transcriptional regulator	Regulator
VQ574_RS17480 (VQ574_17480)	-	3705995..3707050 (-)	1056	WP_063541891.1	DUF2333 family protein	-
VQ574_RS17485 (VQ574_17485)	-	3707265..3708860 (+)	1596	WP_102838687.1	PleD family two-component system response regulator	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49568.95 Da
• Isoelectric Point: 6.2057

>NTDB_id=921856 VQ574_RS17475 WP_152481770.1 3704579..3705916(+) (pilR) [Stutzerimonas frequens strain XN05-1]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLDLVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAESPVDNRLLGSSPPMKVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSDKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADAM
LRRLAQECGDSSARLHPDALAKLENYRFPGNVRELENMLERAYTLCEDDEIKAGDLRLADSPGLSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=921856 VQ574_RS17475 WP_152481770.1 3704579..3705916(+) (pilR) [Stutzerimonas frequens strain XN05-1]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCCGATATCCGCGAGTTGCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGATACCCGCAGCGCCCGCAACCTCAAGGAAGCGCGCGAGTGCCTGGCACGCGAGCACTATGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAGCGGCTTGGATCTGGTGCAGTACATCCAGCAGCAGCATCCACAACTGCCGGTGGCG
ATGATCACCGCCTATGGCAGTCTCGACACCGCCATCGGCGCCCTGAAGGCTGGCGCTTTCGATTTTCTGACCAAACCTGT
GGACCTCAACCGCCTTCGCGAACTCGTCAGCACCGCCTTGCGGCTGCGCGCACCGGCGGCCGAATCGCCAGTGGACAATC
GCCTGCTCGGTAGTTCGCCGCCGATGAAGGTCCTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCGGTCTAT
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCCCGCCTGATTCACGAACAGGGCCCACGCAGCGACAAGCCCTT
CGTGCCGGTCAACTGCGGCGCGATCCCTTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCAGTG
GCGCAATCGAGGACAAGCCCGGGCTGTTCCAGGCGGCCAACGGCGGCACGCTGTTTCTCGACGAGGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAGGCCGTACGTGCGGTTGGCGGCGCGCAGGAAGTGATGGT
CGACGTCCGCATCCTCTGTGCCACCCACAAGGATCTGGCCAGCGAAGTGGCCGCAGGCCGCTTCCGCCAGGACCTGTATT
ACCGTCTGAACGTCATCGAACTGCGTGTGCCGCCATTACGCGAACGCCGTGAAGACATCGGCCTGCTCGCCGATGCCATG
CTGCGCCGGCTGGCACAGGAATGCGGCGACAGCAGTGCCCGGCTGCATCCTGATGCCCTGGCGAAGCTGGAAAACTATCG
TTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGGGCCTACACGCTCTGCGAAGACGACGAGATCAAGGCCG
GTGACCTCCGTCTAGCCGACAGCCCGGGCCTGTCGGAGAATGGCGAAGCCAGTCTGGCGCAGATCGATAATCTGGAAGAC
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCCCTTGAGGAAACCCGCTGGAACCGCACCGCGGCGGCCCAGCG
GCTTGGCCTGACCTTCCGCTCGATGCGCTACCGGCTGAAAAAGCTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	86.261	99.775	0.861
pilR	Acinetobacter baumannii strain A118	50.327	100	0.519
luxO	Vibrio cholerae strain A1552	38.479	100	0.387