Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   VQ574_RS17470 Genome accession   NZ_CP142122
Coordinates   3702856..3704451 (+) Length   531 a.a.
NCBI ID   WP_230724397.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain XN05-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697856..3709451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ574_RS17450 (VQ574_17450) pgeF 3699611..3700348 (-) 738 WP_326428905.1 peptidoglycan editing factor PgeF -
  VQ574_RS17455 (VQ574_17455) rluD 3700345..3701319 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VQ574_RS17460 (VQ574_17460) - 3701523..3702512 (+) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  VQ574_RS17465 (VQ574_17465) - 3702633..3702866 (+) 234 WP_110775887.1 PP0621 family protein -
  VQ574_RS17470 (VQ574_17470) pilS 3702856..3704451 (+) 1596 WP_230724397.1 sensor histidine kinase Regulator
  VQ574_RS17475 (VQ574_17475) pilR 3704579..3705916 (+) 1338 WP_152481770.1 sigma-54-dependent transcriptional regulator Regulator
  VQ574_RS17480 (VQ574_17480) - 3705995..3707050 (-) 1056 WP_063541891.1 DUF2333 family protein -
  VQ574_RS17485 (VQ574_17485) - 3707265..3708860 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58867.90 Da        Isoelectric Point: 8.1622

>NTDB_id=921855 VQ574_RS17470 WP_230724397.1 3702856..3704451(+) (pilS) [Stutzerimonas frequens strain XN05-1]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSVSRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLGPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=921855 VQ574_RS17470 WP_230724397.1 3702856..3704451(+) (pilS) [Stutzerimonas frequens strain XN05-1]
GTGGGCACTGAGAACCTCGCTTTTCTCGGCGATCAGGGACGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACAAT
CGGCCTGGCACTGGTGCTGCTGATAAGCAGTGACCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTGCTC
GGCCTTGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGTGGCACGCCGAGTGGAATCGGTAATCT
GCTGATCATTGCCGTCGCCATCGCCAACATCCTGCTGCGCGGGCGCATCGGGTTCTTCGTTGCCGCCGTGGCAGCGATCG
GCCTGATCTATCTGACCTTCTATCTCAGTGTCAGCCGGCCTGAAGCCAGCAGTCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAATCTGGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGGGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAGTCGCTGACCGGCGAGCGTCTC
GCCCCGCGCTGCCCGGAGCTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGGGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGATATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGACTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
CCGCCTGGCGCAGATCATTCAGGACCACTCTCGACGCATGAACCTGGTCATCGAGAACGTCCTGCAGCTTTCGCGGCGCC
GGCAGGCCGAGCCACAGTTGCTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGCCCCGGCATTGCCGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTCACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAAAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657