Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VPZ82_RS02830 Genome accession   NZ_CP142110
Coordinates   616919..617461 (+) Length   180 a.a.
NCBI ID   WP_021783897.1    Uniprot ID   A0A1L5PMT2
Organism   Pseudomonas putida strain WBC-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 611919..622461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPZ82_RS02815 (VPZ82_02815) bfr 612014..612478 (+) 465 WP_003255449.1 bacterioferritin -
  VPZ82_RS02820 (VPZ82_02820) uvrA 612551..615385 (-) 2835 WP_028697804.1 excinuclease ABC subunit UvrA -
  VPZ82_RS02825 (VPZ82_02825) - 615515..616909 (+) 1395 WP_021783896.1 MFS transporter -
  VPZ82_RS02830 (VPZ82_02830) ssb 616919..617461 (+) 543 WP_021783897.1 single-stranded DNA-binding protein Machinery gene
  VPZ82_RS02835 (VPZ82_02835) - 617552..618934 (-) 1383 WP_135192534.1 PLP-dependent aminotransferase family protein -
  VPZ82_RS02840 (VPZ82_02840) - 619135..619920 (+) 786 WP_103443400.1 sulfite exporter TauE/SafE family protein -
  VPZ82_RS02845 (VPZ82_02845) - 619942..620703 (+) 762 WP_103443401.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19931.03 Da        Isoelectric Point: 5.9286

>NTDB_id=921758 VPZ82_RS02830 WP_021783897.1 616919..617461(+) (ssb) [Pseudomonas putida strain WBC-3]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQYNQAPPRQQAQRPQQAPQRPAP
QQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=921758 VPZ82_RS02830 WP_021783897.1 616919..617461(+) (ssb) [Pseudomonas putida strain WBC-3]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATTGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAATACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCCCAGCGCCCAGCGCCG
CAACAGCCTGCGCCGCAGCCGGCTGCTGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L5PMT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.593

100

0.572
  ssb Neisseria meningitidis MC58

49.451

100

0.5
  ssb Neisseria gonorrhoeae MS11

49.451

100

0.5
  ssb Glaesserella parasuis strain SC1401

48.913

100

0.5