Detailed information NTG0921636

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: VQ575_RS22565
• Genome accession: NZ_CP142104
• Coordinates: 5036964..5038310 (+)
• Length: 448 a.a.
• NCBI ID: WP_325918446.1
• Uniprot ID: -
• Organism: Pseudomonas frederiksbergensis strain YE17
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5031964..5043310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VQ575_RS22540 (VQ575_22540)	pgeF	5032179..5032904 (-)	726	WP_325918445.1	peptidoglycan editing factor PgeF	-
VQ575_RS22545 (VQ575_22545)	rluD	5032901..5033863 (-)	963	WP_039593882.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
VQ575_RS22550 (VQ575_22550)	-	5034015..5035031 (+)	1017	WP_045156978.1	outer membrane protein assembly factor BamD	-
VQ575_RS22555 (VQ575_22555)	-	5035155..5035388 (+)	234	WP_039593884.1	PP0621 family protein	-
VQ575_RS22560 (VQ575_22560)	pilS	5035378..5036967 (+)	1590	WP_039593885.1	two-component system sensor histidine kinase NtrB	Regulator
VQ575_RS22565 (VQ575_22565)	pilR	5036964..5038310 (+)	1347	WP_325918446.1	sigma-54 dependent transcriptional regulator	Regulator
VQ575_RS22570 (VQ575_22570)	-	5038407..5038623 (-)	217	Protein_4458	DUF6124 family protein	-
VQ575_RS22575 (VQ575_22575)	thiO	5038706..5039806 (-)	1101	WP_039593887.1	glycine oxidase ThiO	-
VQ575_RS22580 (VQ575_22580)	-	5039864..5040268 (-)	405	WP_039593888.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50022.33 Da
• Isoelectric Point: 6.1526

>NTDB_id=921636 VQ575_RS22565 WP_325918446.1 5036964..5038310(+) (pilR) [Pseudomonas frederiksbergensis strain YE17]
MNTRSRQRILIVDDEPDIRELLEMTLGRMKLDTRSAKNLAEAQSTLAGEAFDLCLTDMRLPDGTGLELVKHIQQCYPQLP
VAMITAYGSLEVAIDALKAGAFDFLTKPVDLARLRELVGSALRLSPGTTPTATVERCLLGDSPPMRSVRNHIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRASQHFVPVNCGAIPTELMESEFFGHRKGSFTGAIEDKPGLFQAAHGGTLFLDEVA
DLPLTMQVKLLRAIQEKAVRAVGGQQEEIVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAAGTGNPAATLHPQALEALRNYRFPGNVRELENMLERAYTLCEHHQIEADDLRLAESNAAGDLANPDLVRVDN
LEDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=921636 VQ575_RS22565 WP_325918446.1 5036964..5038310(+) (pilR) [Pseudomonas frederiksbergensis strain YE17]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGAAATGACCCTGGG
ACGGATGAAACTCGACACCCGCAGCGCCAAGAACCTGGCCGAGGCGCAATCGACGCTGGCGGGCGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAGCTGGTCAAACACATCCAGCAATGTTATCCCCAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAGTCGCCATCGATGCCCTCAAGGCCGGCGCCTTCGATTTCCTGACCAA
GCCCGTCGACCTGGCCCGCCTGCGCGAACTCGTCGGCAGCGCCCTGCGCCTGTCACCGGGCACCACGCCCACCGCGACCG
TAGAGCGCTGCCTGCTGGGCGACTCGCCACCGATGCGCAGCGTGCGCAACCACATCGAAAAACTGGCCCGCAGCCAGGCA
CCGGTATACATCAGTGGTGAGTCGGGATGCGGCAAGGAACTGGTCGCCCGCCTGATCCACGAACAAGGCCCGCGGGCCAG
CCAGCACTTCGTGCCCGTCAACTGCGGGGCGATTCCCACGGAGCTGATGGAAAGCGAATTTTTTGGCCACCGCAAAGGCA
GTTTTACCGGCGCCATCGAAGACAAACCCGGACTGTTCCAGGCCGCCCACGGCGGAACGCTATTTCTCGACGAAGTGGCG
GACCTGCCGCTGACGATGCAGGTCAAGCTCTTGCGGGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGGGGGCAGCAGGA
AGAAATAGTGGACGTACGTATTCTCTGCGCCACCCATAAAGACCTGGACGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATCTGTATTACCGACTGAACGTCATCGAGCTGCGCGTCCCGCCCCTGCGCGAACGCCGTGAAGACATCGAACCACTGGCC
AACCACATGCTCCAGCGCCTCGCCGCCGGCACCGGCAATCCTGCGGCGACGCTGCATCCACAGGCGCTCGAGGCCCTGCG
CAACTATCGCTTTCCGGGCAACGTGCGAGAACTGGAGAACATGCTCGAACGAGCCTATACCCTTTGCGAACACCATCAGA
TCGAGGCTGACGACTTGCGGCTTGCCGAAAGCAACGCTGCTGGTGACCTGGCGAATCCCGATCTGGTGCGGGTCGATAAC
CTGGAAGACTATCTGGAAGATGTCGAGCGCAAGGTTATCCTCCAGGCGCTTGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCACAACGATTGAAGTTGTCGTTTCGGTCGATGCGATATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.378	99.107	0.777
pilR	Acinetobacter baumannii strain A118	50.109	100	0.513
luxO	Vibrio cholerae strain A1552	37.472	98.884	0.371