Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   VQ575_RS22560 Genome accession   NZ_CP142104
Coordinates   5035378..5036967 (+) Length   529 a.a.
NCBI ID   WP_039593885.1    Uniprot ID   A0A0B1YYM3
Organism   Pseudomonas frederiksbergensis strain YE17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5030378..5041967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ575_RS22540 (VQ575_22540) pgeF 5032179..5032904 (-) 726 WP_325918445.1 peptidoglycan editing factor PgeF -
  VQ575_RS22545 (VQ575_22545) rluD 5032901..5033863 (-) 963 WP_039593882.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VQ575_RS22550 (VQ575_22550) - 5034015..5035031 (+) 1017 WP_045156978.1 outer membrane protein assembly factor BamD -
  VQ575_RS22555 (VQ575_22555) - 5035155..5035388 (+) 234 WP_039593884.1 PP0621 family protein -
  VQ575_RS22560 (VQ575_22560) pilS 5035378..5036967 (+) 1590 WP_039593885.1 two-component system sensor histidine kinase NtrB Regulator
  VQ575_RS22565 (VQ575_22565) pilR 5036964..5038310 (+) 1347 WP_325918446.1 sigma-54 dependent transcriptional regulator Regulator
  VQ575_RS22570 (VQ575_22570) - 5038407..5038623 (-) 217 Protein_4458 DUF6124 family protein -
  VQ575_RS22575 (VQ575_22575) thiO 5038706..5039806 (-) 1101 WP_039593887.1 glycine oxidase ThiO -
  VQ575_RS22580 (VQ575_22580) - 5039864..5040268 (-) 405 WP_039593888.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58713.56 Da        Isoelectric Point: 7.6740

>NTDB_id=921635 VQ575_RS22560 WP_039593885.1 5035378..5036967(+) (pilS) [Pseudomonas frederiksbergensis strain YE17]
MIAEAERPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLILNILLVVFLENTRHPARLF
GLALTDVSLLSWLFFVAGGAPSAIGNLIIVSVAIGNTLLRGRIGLLLAAVATLGIVGSTLVLGLSDSSRPSSYLQAGTLG
ALCFAAALLVQRLTRRLEASETLAEQRASEVLSLEALNALILQRMRTGILVLDRQRKVQLANESALNLLGMHDLIGQRID
DSSSALVERLQLWLNNPSLRPQSLTISGSGLTLQPSFIALGSQDQQQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLRAWLEQFVQQARESAAPH
QQLHLHIAPGDYITLMDPDQLAQVLDNLLRNAWRHSAMAHERAEAWLELFIDPHSQLAALDIRDNGPGVTPDQQAHLFEP
FFTTSHQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=921635 VQ575_RS22560 WP_039593885.1 5035378..5036967(+) (pilS) [Pseudomonas frederiksbergensis strain YE17]
GTGATCGCTGAGGCCGAACGCCCCCGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTTTATCACCTGTACCGCCTCAGCAT
CGGCATCACGCTGGTGCTGTTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGATCTGCTGCGCA
GCGGCAGCTGGTTGTACCTGATCCTGAACATCCTGTTGGTGGTATTCCTCGAAAACACCCGCCACCCCGCCCGACTGTTT
GGCCTGGCACTGACCGACGTCTCGCTGTTGTCTTGGTTGTTCTTCGTCGCGGGCGGTGCTCCCAGTGCCATTGGTAACCT
GATCATTGTCTCGGTGGCGATCGGCAATACTTTGCTGCGAGGCCGGATCGGCCTGTTACTCGCTGCCGTGGCCACCCTCG
GCATCGTCGGCTCGACCTTGGTGCTCGGCCTCAGTGATTCGAGCCGGCCCAGCAGTTATCTGCAGGCGGGCACCCTGGGC
GCCTTGTGCTTTGCCGCTGCCTTGCTGGTGCAACGCCTGACCCGACGACTGGAAGCCAGCGAAACCCTTGCCGAGCAACG
GGCCAGCGAAGTGCTCAGCCTCGAAGCGCTCAACGCACTGATCTTGCAACGCATGCGCACCGGCATCCTGGTCCTGGACC
GCCAACGCAAGGTACAACTGGCCAACGAAAGCGCCTTGAACCTGCTGGGTATGCATGACCTGATCGGCCAGCGGATCGAT
GACTCATCAAGCGCCTTGGTCGAACGACTGCAATTGTGGCTGAACAACCCCAGCCTGCGACCGCAGAGCCTGACCATCAG
CGGCAGCGGCCTGACGTTGCAGCCCAGCTTCATCGCCCTGGGATCACAAGACCAGCAACAGATCCTGGTATTCCTCGAAG
ACCTGGCCCAGGTGGCCCAACACGCCCAGCAACTGAAGCTGGCTTCCCTCGGGCGCCTGACCGCCGGTATTGCCCATGAA
ATCCGCAATCCACTGGGGGCAATCAGCCACGCCGCACAATTGCTGCGTGAATCCGAGGAACTGAACGACGCGGACCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGTATGAACCGCGTCATCGAGAATGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGCGCCGCAACGCCTGGACCTACGCGCCTGGCTGGAGCAATTCGTCCAACAAGCCCGGGAAAGCGCGGCGCCACAC
CAACAGTTGCACCTGCACATCGCCCCGGGCGACTACATCACCTTGATGGACCCCGACCAATTGGCGCAAGTGCTGGACAA
CCTGCTACGCAACGCCTGGCGCCACAGCGCGATGGCCCATGAACGGGCCGAAGCCTGGCTGGAGCTGTTCATCGATCCGC
ACAGCCAATTGGCGGCACTGGACATCCGCGACAACGGTCCCGGCGTGACGCCCGACCAGCAGGCGCACTTGTTCGAACCT
TTCTTCACCACCAGCCACCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YYM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.712

99.811

0.586