Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VP467_RS00920 Genome accession   NZ_CP142102
Coordinates   204136..204717 (+) Length   193 a.a.
NCBI ID   WP_001215083.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain C20AB01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199136..209717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP467_RS00895 (VP467_00895) - 199757..200110 (+) 354 WP_000580161.1 DUF1304 domain-containing protein -
  VP467_RS00900 (VP467_00900) - 200163..200504 (+) 342 WP_000263326.1 GlpM family protein -
  VP467_RS00905 (VP467_00905) tenA 200554..201228 (-) 675 WP_000899418.1 thiaminase II -
  VP467_RS00910 (VP467_00910) - 201491..202573 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -
  VP467_RS00915 (VP467_00915) - 202720..204084 (+) 1365 WP_000980460.1 MFS transporter -
  VP467_RS00920 (VP467_00920) ssb 204136..204717 (+) 582 WP_001215083.1 single-stranded DNA-binding protein Machinery gene
  VP467_RS00925 (VP467_00925) - 204758..205081 (-) 324 WP_000082711.1 AzlD domain-containing protein -
  VP467_RS00930 (VP467_00930) - 205078..205773 (-) 696 WP_000415575.1 AzlC family ABC transporter permease -
  VP467_RS00935 (VP467_00935) - 205842..206390 (+) 549 WP_053530924.1 helix-turn-helix domain-containing protein -
  VP467_RS00940 (VP467_00940) - 206696..208138 (+) 1443 WP_000718865.1 amino acid permease -
  VP467_RS00945 (VP467_00945) - 208199..209698 (-) 1500 WP_001257169.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=921571 VP467_RS00920 WP_001215083.1 204136..204717(+) (ssb) [Acinetobacter baumannii strain C20AB01]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGSGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=921571 VP467_RS00920 WP_001215083.1 204136..204717(+) (ssb) [Acinetobacter baumannii strain C20AB01]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTAGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394